View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_110 (Length: 304)
Name: NF0809_high_110
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_110 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 44 - 294
Target Start/End: Complemental strand, 3542436 - 3542187
Alignment:
| Q |
44 |
attgttctaattttgacgagtctctgaaactcgacgctggatggttattaaaaagaaaatagaatgagagagaatttgagtaggagtaaaattaggagag |
143 |
Q |
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| T |
3542436 |
attgttctaattttgatgagtctctgaaacttgacgctggatggttattaaaaagaaaatagaatgagagagaatttgagtaggagtaaaattaggagag |
3542337 |
T |
|
| Q |
144 |
tggagtgagctaaaataggagaaatagttgtaacaaattttattttatgatatggttttgaaattnnnnnnnnnnnngtaattttatgatatggataggg |
243 |
Q |
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| T |
3542336 |
tggagtgagctaaaataggagaaatagttgtaacaaattttattttatgatatggttttgaaattaaaaataaaaaagtaattttatgatatggataggg |
3542237 |
T |
|
| Q |
244 |
tattgagacttttgaggtatgggaggggtcagagatagtttggtatctgtg |
294 |
Q |
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| T |
3542236 |
tattgagacttttgaggtat-ggaggggtcagagatagtttggtatctgtg |
3542187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 1904985 - 1905014
Alignment:
| Q |
6 |
aatgattgttaaagtgttcatttgtgtata |
35 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1904985 |
aatgattgttaaagtgttcatttgtgtata |
1905014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 1909218 - 1909247
Alignment:
| Q |
6 |
aatgattgttaaagtgttcatttgtgtata |
35 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1909218 |
aatgattgttaaagtgttcatttgtgtata |
1909247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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