View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_high_116 (Length: 298)

Name: NF0809_high_116
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_high_116
NF0809_high_116
[»] chr8 (1 HSPs)
chr8 (4-269)||(25192092-25192357)
[»] chr7 (1 HSPs)
chr7 (80-176)||(19205384-19205480)
[»] scaffold0147 (1 HSPs)
scaffold0147 (75-269)||(8312-8503)
[»] chr5 (2 HSPs)
chr5 (11-41)||(21194063-21194093)
chr5 (11-43)||(22423762-22423794)
[»] chr3 (2 HSPs)
chr3 (11-44)||(8842418-8842451)
chr3 (11-43)||(20503554-20503586)
[»] chr1 (2 HSPs)
chr1 (11-48)||(35702535-35702572)
chr1 (13-41)||(5898206-5898234)
[»] scaffold0793 (1 HSPs)
scaffold0793 (11-43)||(4819-4851)
[»] chr4 (3 HSPs)
chr4 (11-43)||(715543-715575)
chr4 (11-43)||(752869-752901)
chr4 (10-42)||(28470453-28470485)
[»] chr2 (1 HSPs)
chr2 (11-43)||(26769611-26769643)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 269
Target Start/End: Complemental strand, 25192357 - 25192092
Alignment:
Q  4 tgtcggtgcctaatccgaggagtgtccgtgctttatagataagaattaaacattaaaagatatattgatagtgagaaaggagagagtagttaaccatatt 103  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  25192357 tgtcggtgcctaatccgaggagtatccgtactttatagataagaattaaacattaaaagatatattgatagtgataaaggagacagtagttaaccatatt 25192258  T
Q  104 gacttctccatttctgaatatgagggaacaagcttgatgtccagctatgagatatagtatcacaaatatcttctttttcttctttatgcttgacagataa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  25192257 gacttctccatttctgaatatgagggaacaagcttgatgtccagctatgagatatagtatcgcaaatatcttctttttcttctttatgcttgagagataa 25192158  T
Q  204 ttgttgttgttggtgtaaaagggtttttatttcttggatattaccgaagtaaaagtgaggagaagg 269  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  25192157 ttgttgttgttggtgtaaaagggtcttcatttcttggatattacccaagtaaaagtgaggagaagg 25192092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 19205480 - 19205384
Alignment:
Q  80 aaggagagagtagttaaccatattgacttctccatttctgaatatgagggaacaagcttgatgtccagctatgagatatagtatcacaaatatcttc 176  Q
    ||||||| ||||||| |||||||||  ||||||| || ||||||||||| || |   |||| ||||| ||||||||||||| | |||||| ||||||    
T  19205480 aaggagaaagtagtttaccatattgttttctccacttgtgaatatgaggaaaaacagttgaagtccaactatgagatatagaagcacaaacatcttc 19205384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 269
Target Start/End: Complemental strand, 8503 - 8312
Alignment:
Q  75 tgagaaaggagagagtagttaaccatattgacttctccatttctgaatatgagggaacaagcttgatgtccagctatgagatatagtatcacaaatatct 174  Q
    ||||| |||| | ||||||| |||||||||  || |||| || ||||||||||||| |||  |||  ||||||||||||||||||| | || ||  || |    
T  8503 tgagagaggacaaagtagttgaccatattggtttgtccacttgtgaatatgagggagcaaagttgtagtccagctatgagatatagaaacaaaaccatgt 8404  T
Q  175 tctttttcttctttatgcttgac-agataattgttgttgttggtgtaaaagggtttttatttcttggatattaccgaagtaaaagtgaggagaagg 269  Q
    |||| || || ||| || |||||  || |    |||||||||| |||||||||| || ||||||| ||| ||||| ||||| || |||||||||||    
T  8403 tcttcttgttttttttgtttgacttgaga----ttgttgttggagtaaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaagg 8312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 21194093 - 21194063
Alignment:
Q  11 gcctaatccgaggagtgtccgtgctttatag 41  Q
    |||||||||||||||||||||||||||||||    
T  21194093 gcctaatccgaggagtgtccgtgctttatag 21194063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 22423794 - 22423762
Alignment:
Q  11 gcctaatccgaggagtgtccgtgctttatagat 43  Q
    |||||||||||||||||||||||||| ||||||    
T  22423794 gcctaatccgaggagtgtccgtgcttcatagat 22423762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 8842418 - 8842451
Alignment:
Q  11 gcctaatccgaggagtgtccgtgctttatagata 44  Q
    |||||||||||||||||||||||||| |||||||    
T  8842418 gcctaatccgaggagtgtccgtgcttcatagata 8842451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 20503554 - 20503586
Alignment:
Q  11 gcctaatccgaggagtgtccgtgctttatagat 43  Q
    |||||||||||||||||||||||||| ||||||    
T  20503554 gcctaatccgaggagtgtccgtgcttcatagat 20503586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 35702572 - 35702535
Alignment:
Q  11 gcctaatccgaggagtgtccgtgctttatagataagaa 48  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  35702572 gcctaatccgaggagtgtccgtgcttcatagttaagaa 35702535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 5898234 - 5898206
Alignment:
Q  13 ctaatccgaggagtgtccgtgctttatag 41  Q
    |||||||||||||||||||||||||||||    
T  5898234 ctaatccgaggagtgtccgtgctttatag 5898206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 4851 - 4819
Alignment:
Q  11 gcctaatccgaggagtgtccgtgctttatagat 43  Q
    |||||||||||||||||||||||||| ||||||    
T  4851 gcctaatccgaggagtgtccgtgcttcatagat 4819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 715575 - 715543
Alignment:
Q  11 gcctaatccgaggagtgtccgtgctttatagat 43  Q
    |||||||||||||||||||||||||| ||||||    
T  715575 gcctaatccgaggagtgtccgtgcttcatagat 715543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 752901 - 752869
Alignment:
Q  11 gcctaatccgaggagtgtccgtgctttatagat 43  Q
    |||||||||||||||||||||||||| ||||||    
T  752901 gcctaatccgaggagtgtccgtgcttcatagat 752869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 28470453 - 28470485
Alignment:
Q  10 tgcctaatccgaggagtgtccgtgctttataga 42  Q
    ||||||||||||||||||||||||||| |||||    
T  28470453 tgcctaatccgaggagtgtccgtgcttcataga 28470485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 26769611 - 26769643
Alignment:
Q  11 gcctaatccgaggagtgtccgtgctttatagat 43  Q
    |||||||||||||||||||||||||| ||||||    
T  26769611 gcctaatccgaggagtgtccgtgcttcatagat 26769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5954 times since January 2019
Visitors: 5761