View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_129 (Length: 263)
Name: NF0809_high_129
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_129 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 53089500 - 53089751
Alignment:
| Q |
1 |
catcaacatgctttcttctttagctttctctagattttctcgtgtttcctccagctcagctgtaacgttttcaacccttgaagactgatcaaccccattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53089500 |
catcaacatgctttcttctttagctttctctagattttctcgtgtctcctccagctcagctgtaacgttttcaacccttgaagactgatcaaccccattt |
53089599 |
T |
|
| Q |
101 |
tcatttgctccattgtgaatctat----------------agacgaacaacaataaactattaatcatgtgtggaagtgtaaattttaaaccataaacaa |
184 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
53089600 |
tcatttgctccattgtgaatctatatattagaagacatggagacgaacaacaataaattattaatcatgtgtggaagtgtaaattttaaaccataaacaa |
53089699 |
T |
|
| Q |
185 |
gtgatcatgaggaaattagactgtcagataatccttattaatctctaagatg |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
53089700 |
gtgatcatgaggaaattagaccgtcagataatcctaattaatctctaagatg |
53089751 |
T |
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