View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_132 (Length: 254)
Name: NF0809_high_132
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_132 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 5041166 - 5041406
Alignment:
| Q |
1 |
tggacactgaatgtttttgtttccagtaccctctgtagcactgacacttctgatcgaaggcgtgtctggtgtttgcgtccgtgtttgtgtcagtgcttcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || || |||||||||||||||||||| |
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| T |
5041166 |
tggacactgaatgtttttgtttccagtaccctctgtagcactgacacttttgatcgaagacgtgtctggtgttcgcatctgtgtttgtgtcagtgcttcg |
5041265 |
T |
|
| Q |
101 |
tagcttgtactgtttgaaacattactatcagtttcacctgaggaagttgctgtgttactgacataactgaagttccataagtttttgcagtcagaaaata |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5041266 |
tagcttgtactgtttgaaacattactatcagtttcacctgaggaggttgctgtgttactgacataactgaagttccataagtttttgcagtcagaaaata |
5041365 |
T |
|
| Q |
201 |
gctttgaaattccatcattatcattttcgacagaattgtct |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5041366 |
gctttgaaattccatcattatcattttcgacagaagtgtct |
5041406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 14229647 - 14229606
Alignment:
| Q |
31 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
72 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
14229647 |
ctctatagcactgacacttctgatcgaaggcatgtccggtgt |
14229606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 29198600 - 29198644
Alignment:
| Q |
31 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgtttg |
75 |
Q |
| |
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| T |
29198600 |
ctctgtagaaccgacacctctgatctaaggcgtgtctggtgtttg |
29198644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 13635682 - 13635640
Alignment:
| Q |
30 |
cctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
72 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
13635682 |
cctcagtagcactgacacttctgatagaaggcgtgtctggtgt |
13635640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 14782796 - 14782837
Alignment:
| Q |
31 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
72 |
Q |
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| T |
14782796 |
ctctgtagcaccgacacttctgatggaaagcgtgtctggtgt |
14782837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 28136322 - 28136281
Alignment:
| Q |
31 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
72 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| |
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|
| T |
28136322 |
ctctatagcactgacacttctgatcgaagacgtgtctggtgt |
28136281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 12478385 - 12478341
Alignment:
| Q |
28 |
accctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
72 |
Q |
| |
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||||| |||||||| |||| ||||||| ||||||||||||||||| |
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|
| T |
12478385 |
accctttgtagcaccgacatttctgatggaaggcgtgtctggtgt |
12478341 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 4785083 - 4785045
Alignment:
| Q |
34 |
tgtagcactgacacttctgatcgaaggcgtgtctggtgt |
72 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| |
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| T |
4785083 |
tgtagcaccgacacttctgatcgaagacgtgtctggtgt |
4785045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 18263604 - 18263563
Alignment:
| Q |
30 |
cctctgtagcactgacacttctgatcgaaggcgtgtctggtg |
71 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
18263604 |
cctctgtagcaccgacacttctgatcgaagacgtgtcaggtg |
18263563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 36036350 - 36036318
Alignment:
| Q |
36 |
tagcactgacacttctgatcgaaggcgtgtctg |
68 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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| T |
36036350 |
tagcactgacacttctgaccgaaggcgtgtctg |
36036318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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