View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_high_135 (Length: 252)
Name: NF0809_high_135
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_135 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 109044 - 108809
Alignment:
| Q |
1 |
ctcaaggtcaatgtaagagactttc-gagggtttagaggagagtctaatggatttccttagttcatttaaaatggattgtttgggtttgatgttgattag |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109044 |
ctcaaggtcaatgtaagagactttttgagggtttagaggagagtttaatggattttcttagttcatttaaaatggattgtttgggtttgatgttgattag |
108945 |
T |
|
| Q |
100 |
ttcatcaaaggtttgagcttttacaggagcagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatttttgagagaagatttagacttgag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108944 |
ttcatcaaaggtttgagcttttacaggagcagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatttttgagagaagatttagacttgag |
108845 |
T |
|
| Q |
200 |
gtaatagtgatgttttgtggagaatatgtaaatgca |
235 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
108844 |
gtagtagtgatgttttgtgcagaatatgtaaatgca |
108809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 613113 - 612879
Alignment:
| Q |
1 |
ctcaaggtcaatgtaagagactttcgagggtttagaggagagtctaatggatttccttagttcatttaaaatggattgtttgggtttgatgttgattagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
613113 |
ctcaaggtcaatgtaagagactttcgaaggtttagaggagagtctaatggattttcttagttcatttgaaaaggattgtttgggtttgatgttgattagt |
613014 |
T |
|
| Q |
101 |
tcatcaaaggtttgagcttttacaggagcagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatttttgagagaagatttagacttgagg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
613013 |
tcatcaaaggtttgagctttcacaggagcagaggttgtaaagcttttaggaggggagcaagagtaaggttcgatttttgagagaggatttagacttgagg |
612914 |
T |
|
| Q |
201 |
taatagtgatgttttgtggagaatatgtaaatgca |
235 |
Q |
| |
|
|| | |||||||||||||||||| ||||||||||| |
|
|
| T |
612913 |
tagtggtgatgttttgtggagaacatgtaaatgca |
612879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 722173 - 722407
Alignment:
| Q |
1 |
ctcaaggtcaatgtaagagactttcgagggtttagaggagagtctaatggatttccttagttcatttaaaatggattgtttgggtttgatgttgattagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
722173 |
ctcaaggtcaatgtaagagactttcgaaggtttagaggagagtctaatggattttcttagttcatttgaaaaggattgtttgggtttgatgttgattagt |
722272 |
T |
|
| Q |
101 |
tcatcaaaggtttgagcttttacaggagcagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatttttgagagaagatttagacttgagg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
722273 |
tcatcaaaggtttgagctttcacaggagcagaggttgtaaagcttttaggaggggagcaagagtaaggttcgatttttgagagaggatttagacttgagg |
722372 |
T |
|
| Q |
201 |
taatagtgatgttttgtggagaatatgtaaatgca |
235 |
Q |
| |
|
|| | |||||||||||||||||| ||||||||||| |
|
|
| T |
722373 |
tagtggtgatgttttgtggagaacatgtaaatgca |
722407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 118530 - 118296
Alignment:
| Q |
1 |
ctcaaggtcaatgtaagagactttcgagggtttagaggagagtctaatggatttccttagttcatttaaaatggattgtttgggtttgatgttgattagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
118530 |
ctcaaggtcaatgtaagagactttcgaaggtttagaggagagtctaatggattttcttagttcatttgaaaaggattgtttgggtttgatgttgattagt |
118431 |
T |
|
| Q |
101 |
tcatcaaaggtttgagcttttacaggagcagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatttttgagagaagatttagacttgagg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
118430 |
tcatcaaaggtttgagctttcacaggagcagaggttgtaaagcttttaggaggggagcaagagtaaggttcgatttttgagagaggatttagacttgagg |
118331 |
T |
|
| Q |
201 |
taatagtgatgttttgtggagaatatgtaaatgca |
235 |
Q |
| |
|
|| | |||||||||||||||||| ||||||||||| |
|
|
| T |
118330 |
tagtggtgatgttttgtggagaacatgtaaatgca |
118296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 14913770 - 14913539
Alignment:
| Q |
4 |
aaggtcaatgtaagagactttcgagggtttagaggagagtctaatggatttccttagttcatttaaaatggattgtttgggtttgatgttgattagttca |
103 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14913770 |
aaggtcaatgtaagagattttcgaggatttagaggagagtctaattgattttcttaattcatttgaaatggattgtttgggtttgatgttgattagttca |
14913671 |
T |
|
| Q |
104 |
tcaaaggtttgagcttttacaggagcagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatttttgagagaagatttagacttgaggtaa |
203 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
14913670 |
tcaaaggtttgagctttcacatgagcagaggttgtaaagcttttaggaggggagcaagagtaaggttcgatttgtgagagaggatttagacttgaggtag |
14913571 |
T |
|
| Q |
204 |
tagtgatgttttgtggagaatatgtaaatgca |
235 |
Q |
| |
|
| ||||||| |||||||||||||||||||||| |
|
|
| T |
14913570 |
tggtgatgtcttgtggagaatatgtaaatgca |
14913539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21757131 - 21756900
Alignment:
| Q |
1 |
ctcaaggtcaatgtaagagactttcgagggtttagaggagagtctaatggatttccttagttcatttaaaatggattgtttgggtttgatgttgattagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21757131 |
ctcaaggtcaatgtaagagactttcgagggtttagaggagagtctaatggattttcttagttcatttgtaatggattgtttaggtttgatgttgattagt |
21757032 |
T |
|
| Q |
101 |
tcatcaaaggtttgagcttttacaggagcagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatttttgagagaagatttagacttgagg |
200 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21757031 |
tcatcaaaggtttgagctttcataggagcagaggtt-aaaagcttttaggaggggagcaagagtaaggttcgatttgtgagagaagatttagacttgagg |
21756933 |
T |
|
| Q |
201 |
taatagtgatgttttgtggagaatatgtaaatg |
233 |
Q |
| |
|
| | |||||||||||||| ||||||| ||||| |
|
|
| T |
21756932 |
aagtggtgatgttttgtggggaatatggaaatg |
21756900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 24820801 - 24820895
Alignment:
| Q |
141 |
agcttttagaaggggagcaatagtaaggttcgatttttgagagaagatttagacttgaggtaatagtgatgttttgtggagaatatgtaaatgca |
235 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
24820801 |
agctattaggaggggagcaagagtaaggttcgatttttgagagaggatttagacttgaggtagtggtgatgttttgtggagaacatgtaaatgca |
24820895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 19692344 - 19692171
Alignment:
| Q |
2 |
tcaaggtcaatgtaagagactttcgagggtttagaggagagtctaatggatttccttagttcatttaaaatggattgtttgggtttgatgttgattagtt |
101 |
Q |
| |
|
|||||||||| || ||||| || || ||||| ||||| |||||||||||||| || | ||||||| | | ||| ||||| ||||||||||| | || || |
|
|
| T |
19692344 |
tcaaggtcaaaataggagaccttagaaggttttgaggatagtctaatggattttctaatttcatttgagagggactgttttggtttgatgttaagtaatt |
19692245 |
T |
|
| Q |
102 |
catcaaaggtttgagcttttacaggagcagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatt |
175 |
Q |
| |
|
|||||||||||| | |||||| ||||| ||||| ||| ||||||||| ||| || ||| || |||| |||||| |
|
|
| T |
19692244 |
catcaaaggtttcaacttttattggagctgaggtcgtagagcttttaggaggtgaacaagagaaaggatcgatt |
19692171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 9001198 - 9001052
Alignment:
| Q |
29 |
ggtttagaggagagtctaatggatttccttagttcatttaaaatggattgtttgggtttgatgttgattagttcatcaaaggtttgagcttttacaggag |
128 |
Q |
| |
|
||||| ||||| |||||||||||||| || | ||||||| | | ||| ||| | ||||||||| | | || |||||||||||||| |||||||| |||| |
|
|
| T |
9001198 |
ggttttgaggatagtctaatggattttctaatttcatttgagagggactgtcttggtttgatgctaagtaattcatcaaaggtttcagcttttattggag |
9001099 |
T |
|
| Q |
129 |
cagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatt |
175 |
Q |
| |
|
| ||||| ||| ||||||||| ||| || ||| || |||| |||||| |
|
|
| T |
9001098 |
ctgaggtcgtagagcttttaggaggtgaacaagagaaaggatcgatt |
9001052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 9010363 - 9010217
Alignment:
| Q |
29 |
ggtttagaggagagtctaatggatttccttagttcatttaaaatggattgtttgggtttgatgttgattagttcatcaaaggtttgagcttttacaggag |
128 |
Q |
| |
|
||||| ||||| |||||||||||||| || | ||||||| | | ||| ||| | ||||||||| | | || |||||||||||||| |||||||| |||| |
|
|
| T |
9010363 |
ggttttgaggatagtctaatggattttctaatttcatttgagagggactgtcttggtttgatgctaagtaattcatcaaaggtttcagcttttattggag |
9010264 |
T |
|
| Q |
129 |
cagaggttgtaaagcttttagaaggggagcaatagtaaggttcgatt |
175 |
Q |
| |
|
| ||||| ||| ||||||||| ||| || ||| || |||| |||||| |
|
|
| T |
9010263 |
ctgaggtcgtagagcttttaggaggtgaacaagagaaaggatcgatt |
9010217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5545 times since January 2019
Visitors: 5757