View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_high_143 (Length: 251)

Name: NF0809_high_143

Description: NF0809

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0809_high_143

[»] scaffold0164 (3 HSPs)

Target: scaffold0164 (Bit Score: 56; Significance: 3e-23; HSPs: 3)

Name: scaffold0164

Description:

Target: scaffold0164; HSP #1

Raw Score: 56; E-Value: 3e-23

Query Start/End: Original strand, 196 - 251

Target Start/End: Complemental strand, 33291 - 33236

Alignment:

Q	196	atgcttacgagggagtctcatattttagttttctaaatttgtcagtgaaaatcaac	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33291	atgcttacgagggagtctcatattttagttttctaaatttgtcagtgaaaatcaac	33236	T

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Target: scaffold0164; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 76 - 110

Target Start/End: Complemental strand, 33411 - 33377

Alignment:

Q	76	catagtcagaatataaagggggagggttgcagaag	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33411	catagtcagaatatgaagggggagggttgcagaag	33377	T

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Target: scaffold0164; HSP #3

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 14 - 43

Target Start/End: Complemental strand, 33438 - 33409

Alignment:

Q	14	agggggatggttggagaagtatccatgcat	43	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33438	agggggatggttggagaagtatccatgcat	33409	T

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