View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_high_149 (Length: 251)
Name: NF0809_high_149
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_149 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 35864704 - 35864942
Alignment:
| Q |
13 |
aatatttagatcactatgttcctcggacgtatttctaaaactttgatcatgtagaaagggaatcgcacgtgcttaaatatgcttcccattttagtaaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35864704 |
aatatttagatcactatgttcctcggacgtatttctaaaactttgatcatgtagaaagggaatcgcacgtgcttaaatatgcttcccattttagtaaaag |
35864803 |
T |
|
| Q |
113 |
acaaaagaattaatgcattttaaagtcaaaacatagtaacaaacccaaaacaaattcaacactatttaaacttttacttctgcgtttgacagccaacatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35864804 |
acaaaagaattaatgcattttaaagtcaaaacatggtaacaaacccaaaacaaattcaacactatttaaacttttacttctgcgtttgacagccaacatc |
35864903 |
T |
|
| Q |
213 |
tttatatgcatgcattgcaaaaaatgcaaaactggctaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35864904 |
tttatatgcatgcattgcaaaaaatgcaaaactggctaa |
35864942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 34814289 - 34814432
Alignment:
| Q |
17 |
tttagatcactatgttcctcggacgtatttctaaaacttt-gatcatgtagaaagggaatcgcacgtgcttaaatatgcttcccattttagtaaaagaca |
115 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||||| | |||||||||||||||||| | | ||||||||||||||||||||||| |||||||| |
|
|
| T |
34814289 |
tttagatcactatgttccttggacttagttctaaaactcaagttcatgtagaaagggaatcctaagagcttaaatatgcttcccattttattaaaagac- |
34814387 |
T |
|
| Q |
116 |
aaagaattaatgcattttaaagtcaaaacatagtaacaaacccaaa |
161 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34814388 |
-aagaatcaatgcattttaaagtcaaaacataagaacaaacccaaa |
34814432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 34814565 - 34814617
Alignment:
| Q |
157 |
ccaaaacaaattcaacactatttaaacttttacttctgcgtttgacagccaac |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
34814565 |
ccaaaacaaattcaacactatttacacttttactcctgcttttgacagccaac |
34814617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 34814466 - 34814516
Alignment:
| Q |
91 |
atgcttcccattttagtaaaagacaaaagaattaatgcattttaaagtcaaaa |
143 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||||||||||||||||||| |
|
|
| T |
34814466 |
atgcttcccattttattaaaagacaa--gaatcaatgcattttaaagtcaaaa |
34814516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4978 times since January 2019
Visitors: 5753