View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_high_155 (Length: 250)
Name: NF0809_high_155
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_155 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 6088858 - 6088626
Alignment:
| Q |
1 |
aaaatgcaggatgatacagtgacaggaatagattcttcagttgacattgctacagaggagaacttgaagaaactgtgccaaattggcgagaacttgttaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||| |
|
|
| T |
6088858 |
aaaatgcaggatgatacattgacaggaatcgattcttcagttgacattgctacagaggagaacttgaagaaactgtgccaaattggtgaaaatttattaa |
6088759 |
T |
|
| Q |
101 |
agaaaccggtctctagagtcaatttggaaaatggccactttgagccactgacaaatggagaaaccaatgaagatgctctcaagaggtaattaagattaac |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
6088758 |
agaaaccggtctctagagtcaatttagaaaatggtcactttgagccactgacaaatggagaaaccaatgaagaagctctcaagaggtaattaagataaat |
6088659 |
T |
|
| Q |
201 |
cagtagtgatggtacattttaattaccactcaa |
233 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |
|
|
| T |
6088658 |
tagtagagacggtacattttaattaccactcaa |
6088626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 46678056 - 46678189
Alignment:
| Q |
1 |
aaaatgcaggatgatacagtgacaggaatagattcttcagttgacattgctacagaggagaacttgaagaaactgtgccaaattggcgagaacttgttaa |
100 |
Q |
| |
|
|||||||||||||||||| |||| || | ||||||||| ||||| ||| | ||| | ||||| || | ||||| ||||||||||| || | ||||| | |
|
|
| T |
46678056 |
aaaatgcaggatgatacattgaccggtacagattcttcggttgatatttccacaaaagagaatttagaaaaactttgccaaattggtgacagattgttga |
46678155 |
T |
|
| Q |
101 |
agaaaccggtctctagagtcaatttggaaaatgg |
134 |
Q |
| |
|
||||||| || |||| |||||||| || ||||| |
|
|
| T |
46678156 |
agaaaccagtatctaaggtcaatttagagaatgg |
46678189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5284 times since January 2019
Visitors: 5755