View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_high_16 (Length: 617)

Name: NF0809_high_16
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_high_16
NF0809_high_16
[»] chr5 (3 HSPs)
chr5 (120-609)||(15418545-15419034)
chr5 (125-193)||(15450983-15451051)
chr5 (125-181)||(20322001-20322057)
[»] chr1 (2 HSPs)
chr1 (7-110)||(35916472-35916575)
chr1 (337-420)||(52075800-52075883)
[»] chr4 (4 HSPs)
chr4 (375-551)||(35048828-35049008)
chr4 (353-420)||(33450730-33450797)
chr4 (548-610)||(33450642-33450704)
chr4 (159-196)||(35268399-35268436)
[»] chr8 (2 HSPs)
chr8 (348-402)||(7891554-7891608)
chr8 (548-598)||(37234188-37234238)
[»] chr7 (3 HSPs)
chr7 (539-593)||(18776036-18776090)
chr7 (551-598)||(7293904-7293951)
chr7 (352-405)||(7290371-7290424)
[»] chr3 (3 HSPs)
chr3 (377-422)||(45298493-45298538)
chr3 (440-492)||(54595160-54595212)
chr3 (498-599)||(45297441-45297542)
[»] chr2 (1 HSPs)
chr2 (340-405)||(10127471-10127535)


Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 120 - 609
Target Start/End: Complemental strand, 15419034 - 15418545
Alignment:
Q  120 tcacgcactatgtgacaatctatttccaaatgtttggtactttcgtgaaaaactgggttagcagcaatgtgaaggacgcttgcaaacagggccggctaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  15419034 tcacgcactatgtgacaatctatttccaaatgtttggtactttcgtgaaaaactgagttagcagcaatgtgaaggacgcttgcaaacagggctggctaac 15418935  T
Q  220 taaagtttgagagaaacacactgttttttattttaaaattacacttttcacttctcaaattctcttcttttcaacttcctttaacccaatggcagttaac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15418934 taaagtttgagagaaacacactgttttttattttaaaattacacttttcacttctcaaattctcttcttttcaacttcctttaacccaatggcagttaac 15418835  T
Q  320 tattgttgcgttctggtttacaccacaatagcaacaacacctaacacactactccaaaacacaaaccaacctctttccatttgcttgacaagtcattttc 419  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15418834 tattgttgcgttctggtttacaccacaatagcaacaacacctcacacactactccaaaacacaaaccaacctctttccatttgtttgacaagtcattttc 15418735  T
Q  420 ttagatacgatggttgtgattttttataatgtatttgtggtatttaactgttcttaaagatatgatgtttttccactctatgcaacgactaagacatgca 519  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15418734 ttagataagatggttgtgattttttataatgtatttgtggcatttaactgttcttaaagatatgatgtttttccactgtatgcaacgactaagacatgca 15418635  T
Q  520 agtttagtccatgctacttgatatatgtatgtaaaataatagaaaatcatagatgataattcatagttttattttatctttgttcatatc 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15418634 agtttagtccatgctacttgatatatgtatgtaaaataatagaaaatcatagatgataattcatagttttatttcatctttgttcatatc 15418545  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 15451051 - 15450983
Alignment:
Q  125 cactatgtgacaatctatttccaaatgtttggtactttcgtgaaaaactgggttagcagcaatgtgaag 193  Q
    ||||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||| ||||||||    
T  15451051 cactatgtgacaatcaatgtccaagtgcttggttctttcatgaaaaactggattagcagctatgtgaag 15450983  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 20322001 - 20322057
Alignment:
Q  125 cactatgtgacaatctatttccaaatgtttggtactttcgtgaaaaactgggttagc 181  Q
    ||||||||||||||| |||||||| ||||| || | ||| |||||||| ||||||||    
T  20322001 cactatgtgacaatcaatttccaagtgtttagtgcgttcatgaaaaacagggttagc 20322057  T

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Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 35916575 - 35916472
Alignment:
Q  7 cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916575 cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac 35916476  T
Q  107 agct 110  Q
    ||||    
T  35916475 agct 35916472  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 52075800 - 52075883
Alignment:
Q  337 ttacaccacaatagcaacaacacctaacacactactccaaaacacaaaccaacctctttccatttgcttgacaagtcattttct 420  Q
    ||||| || ||||||||||||| ||  |||||| |||||||| ||||| |||||||||| ||||||||| ||| ||||||||||    
T  52075800 ttacatcagaatagcaacaacatctcccacacttctccaaaatacaaatcaacctcttttcatttgcttaacatgtcattttct 52075883  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 551
Target Start/End: Original strand, 35048828 - 35049008
Alignment:
Q  375 aaaacacaaaccaacctctttccatttgcttgacaagtcattttcttagatacgatggttgt-gattttttataatgtat----ttgtggtatttaactg 469  Q
    |||||||||| ||||||| |||||||||||| ||| || |||| |||||||| | | ||| | | |||||||||||| ||    |||||| |||||| |     
T  35048828 aaaacacaaatcaacctcattccatttgcttaacatgtaatttgcttagatatgctagtttttgtttttttataatgaatgtgtttgtggcatttaatta 35048927  T
Q  470 ttcttaaagatatgatgtttttccactctatgcaacgactaagacatgcaagtttagtccatgctacttgatatatgtatgt 551  Q
    ||| | |||||||| |||||| ||||  ||||  ||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  35048928 ttccttaagatatggtgtttt-ccacgatatgacacgactaagacatgagagtttagtccatgctacttgatatatgcatgt 35049008  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 33450797 - 33450730
Alignment:
Q  353 acaacacctaacacactactccaaaacacaaaccaacctctttccatttgcttgacaagtcattttct 420  Q
    |||||||||  |||||||||||||||||||||||||| || ||||||||| || ||| || |||||||    
T  33450797 acaacacctcccacactactccaaaacacaaaccaacatcattccatttggttaacatgttattttct 33450730  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 610
Target Start/End: Complemental strand, 33450704 - 33450642
Alignment:
Q  548 atgtaaaataatagaaaatcatagatgataattcatagttttattttatctttgttcatatca 610  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||  ||||| ||||| ||||    
T  33450704 atgtaaaataatagaaaatcaaagatgataatatatagttttattccatcttggttcaaatca 33450642  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 35268399 - 35268436
Alignment:
Q  159 ctttcgtgaaaaactgggttagcagcaatgtgaaggac 196  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  35268399 ctttcatgaaaaactgggttagctgcaatgtgaaggac 35268436  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 7891608 - 7891554
Alignment:
Q  348 tagcaacaacacctaacacactactccaaaacacaaaccaacctctttccatttg 402  Q
    ||||||||||||||  |||||| ||||||||||||||| ||||||||||||||||    
T  7891608 tagcaacaacacctcccacacttctccaaaacacaaactaacctctttccatttg 7891554  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 598
Target Start/End: Complemental strand, 37234238 - 37234188
Alignment:
Q  548 atgtaaaataatagaaaatcatagatgataattcatagttttattttatct 598  Q
    |||||||| |||||||||  |||||||||||||||||||||||||| ||||    
T  37234238 atgtaaaacaatagaaaacgatagatgataattcatagttttatttcatct 37234188  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 539 - 593
Target Start/End: Original strand, 18776036 - 18776090
Alignment:
Q  539 gatatatgtatgtaaaataatagaaaatcatagatgataattcatagttttattt 593  Q
    |||||||| || ||||||||||||||| |||||||||||||| ||||||||||||    
T  18776036 gatatatgcatctaaaataatagaaaaccatagatgataatttatagttttattt 18776090  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 598
Target Start/End: Original strand, 7293904 - 7293951
Alignment:
Q  551 taaaataatagaaaatcatagatgataattcatagttttattttatct 598  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||||    
T  7293904 taaaacaatagaaaatcatagatgataatttatagttttatttgatct 7293951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 7290371 - 7290424
Alignment:
Q  352 aacaacacctaacacactactccaaaacacaaaccaacctctttccatttgctt 405  Q
    |||| ||||| ||||| | ||| |||||||||||||||||||||||||||||||    
T  7290371 aacatcacctcacacatttctctaaaacacaaaccaacctctttccatttgctt 7290424  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 45298538 - 45298493
Alignment:
Q  377 aacacaaaccaacctctttccatttgcttgacaagtcattttctta 422  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||    
T  45298538 aacacaaatcaacctctttccatttgcttaacaagtcatttactta 45298493  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 440 - 492
Target Start/End: Original strand, 54595160 - 54595212
Alignment:
Q  440 tttttataatgtatttgtggtatttaactgttcttaaagatatgatgtttttc 492  Q
    |||||||| ||||||||||| |||||| ||||| ||||||||||||| |||||    
T  54595160 tttttatattgtatttgtggcatttaattgttcataaagatatgatgcttttc 54595212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 599
Target Start/End: Complemental strand, 45297542 - 45297441
Alignment:
Q  498 tatgcaacgactaagacatgcaagtttagtccatgctacttgatatatgtatgtaaaataatagaaaatcatagatgataattcatagttttattttatc 597  Q
    ||||| || |||||||| || |||||| || ||  |||||||||||||| || ||||| ||||||| | || | ||||||||| ||| |||||||| |||    
T  45297542 tatgccacaactaagacgtgaaagttttgttcacactacttgatatatgcatataaaacaatagaataccacatatgataatttataattttatttcatc 45297443  T
Q  598 tt 599  Q
    ||    
T  45297442 tt 45297441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 10127535 - 10127471
Alignment:
Q  340 caccacaatagcaacaacacctaacacactactccaaaacacaaaccaacctctttccatttgctt 405  Q
    ||||| ||||||||||||||||  |||| | |||||||||||||| |||||||||| |||||||||    
T  10127535 caccaaaatagcaacaacacctc-cacatttctccaaaacacaaatcaacctcttttcatttgctt 10127471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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