View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_160 (Length: 228)
Name: NF0809_high_160
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_160 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 38037891 - 38037669
Alignment:
| Q |
6 |
acaataaatcaacttaaatttcaagaaaaaagcttacatgaaccaaaaagagtggtccatgaatggtgttttgatcttgtagattgtattggtagaagta |
105 |
Q |
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| T |
38037891 |
acaataaatcaatttaaatttcaagaaaaaagcttacatgaaccaaaaagagtggtctatgaatggtgttttgatcttgtagattgtattggtagaagta |
38037792 |
T |
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| Q |
106 |
ggcacccttcctcttgggatcttctttgctgtttcaaaataaaaccagagagacgattttttgtttgttttaaacacacaagttttaaattgagaaagaa |
205 |
Q |
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| T |
38037791 |
ggcacccttcctcttgggatcttctttgctgtttcaaaataaaaccagagagatgattttttgtttgttttaaacacacaagttttaaattgagaaagaa |
38037692 |
T |
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| Q |
206 |
atacaagaggtattccaacacaa |
228 |
Q |
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| T |
38037691 |
atacaagaggtattccaacacaa |
38037669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 10625379 - 10625335
Alignment:
| Q |
6 |
acaataaatcaacttaaatttcaagaaaaaagcttacatgaacca |
50 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
10625379 |
acaataaatcaatttaaatttcacgaaaaaagcttacatgaacca |
10625335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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