View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_166 (Length: 217)
Name: NF0809_high_166
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_166 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 43091157 - 43091246
Alignment:
| Q |
1 |
taaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
90 |
Q |
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| T |
43091157 |
taaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 43091141 - 43091177
Alignment:
| Q |
181 |
tgttacttttatatattaaagctgaaccaataaaaga |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
43091141 |
tgttacttttatgcattaaagctgaaccaataaaaga |
43091177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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