View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_high_21 (Length: 579)

Name: NF0809_high_21
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_high_21
NF0809_high_21
[»] chr4 (17 HSPs)
chr4 (478-571)||(18812560-18812653)
chr4 (478-571)||(10032577-10032670)
chr4 (516-571)||(18789219-18789274)
chr4 (482-571)||(8818642-8818731)
chr4 (482-570)||(8678650-8678738)
chr4 (421-492)||(52545202-52545273)
chr4 (420-484)||(24807482-24807546)
chr4 (385-431)||(8005806-8005852)
chr4 (69-111)||(32866413-32866455)
chr4 (70-121)||(336694-336745)
chr4 (421-472)||(51295222-51295273)
chr4 (70-112)||(19748777-19748819)
chr4 (70-112)||(19790987-19791029)
chr4 (389-430)||(6732731-6732772)
chr4 (494-567)||(25843550-25843623)
chr4 (67-111)||(1627439-1627483)
chr4 (67-111)||(12595514-12595558)
[»] scaffold0245 (2 HSPs)
scaffold0245 (478-571)||(11213-11306)
scaffold0245 (478-566)||(9591-9679)
[»] chr3 (9 HSPs)
chr3 (478-571)||(34143065-34143158)
chr3 (385-484)||(35243937-35244036)
chr3 (385-484)||(35244077-35244176)
chr3 (478-571)||(548210-548303)
chr3 (387-485)||(41874414-41874522)
chr3 (67-123)||(6178309-6178365)
chr3 (478-567)||(43819835-43819926)
chr3 (69-111)||(41637184-41637226)
chr3 (68-112)||(819098-819142)
[»] chr1 (8 HSPs)
chr1 (478-571)||(1284946-1285039)
chr1 (490-570)||(35891393-35891473)
chr1 (387-431)||(33773105-33773149)
chr1 (421-472)||(902136-902187)
chr1 (421-472)||(33773149-33773200)
chr1 (69-112)||(45333440-45333483)
chr1 (65-126)||(31827079-31827140)
chr1 (77-113)||(37186987-37187023)
[»] chr6 (8 HSPs)
chr6 (478-571)||(25050981-25051074)
chr6 (30-126)||(6271475-6271572)
chr6 (522-571)||(6271320-6271369)
chr6 (411-471)||(14620550-14620610)
chr6 (421-472)||(14618983-14619034)
chr6 (421-472)||(14611143-14611194)
chr6 (478-524)||(6232810-6232856)
chr6 (478-570)||(6257951-6258042)
[»] chr5 (6 HSPs)
chr5 (480-571)||(4897321-4897412)
chr5 (379-453)||(8080924-8080998)
chr5 (265-379)||(4921185-4921299)
chr5 (266-379)||(41697591-41697704)
chr5 (67-108)||(21943580-21943621)
chr5 (68-105)||(35649874-35649911)
[»] scaffold0229 (1 HSPs)
scaffold0229 (478-566)||(9919-10007)
[»] chr2 (6 HSPs)
chr2 (387-484)||(25302724-25302821)
chr2 (387-484)||(25306719-25306816)
chr2 (387-472)||(41602364-41602449)
chr2 (279-372)||(31642236-31642329)
chr2 (30-70)||(31642346-31642386)
chr2 (71-111)||(39147909-39147949)
[»] chr7 (2 HSPs)
chr7 (421-472)||(34844111-34844162)
chr7 (75-126)||(39110991-39111042)
[»] scaffold0006 (1 HSPs)
scaffold0006 (423-492)||(39206-39275)
[»] chr8 (1 HSPs)
chr8 (69-110)||(39856182-39856223)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 478 - 571
Target Start/End: Complemental strand, 18812653 - 18812560
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18812653 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctcatgcctacttctcctatgaacttcatcttcatctc 18812560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 478 - 571
Target Start/End: Complemental strand, 10032670 - 10032577
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032670 atctttttcattctaattcaatatgaattacaaggactattcctttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 10032577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 516 - 571
Target Start/End: Complemental strand, 18789274 - 18789219
Alignment:
Q  516 attcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18789274 attcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 18789219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 482 - 571
Target Start/End: Complemental strand, 8818731 - 8818642
Alignment:
Q  482 ttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    ||||| |||||||||||||| ||| | ||||||||||| ||||| || | |||| ||||||||||||||||| |||||||||||||||||    
T  8818731 ttttctatctaattcaatataaatcataaggattattcctttgtatcaatctctcatgcctacttctcctataaacttcatcttcatctc 8818642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 482 - 570
Target Start/End: Original strand, 8678650 - 8678738
Alignment:
Q  482 ttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatct 570  Q
    |||||| | ||||| ||||||||||||||||||||||  ||  ||||||||| | | |||||||||||||||||| |||||||||||||    
T  8678650 ttttcattttaattgaatatgaattacaaggattatttcttattttctacctatcaagcctacttctcctatgaatttcatcttcatct 8678738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 492
Target Start/End: Complemental strand, 52545273 - 52545202
Alignment:
Q  421 agagttagttacacaactaaactttatatatagaaacattcatgtatcattttattcatctttt-tcaatcta 492  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||| ||||||||    
T  52545273 agagttagttacacaactaaactctatatataggaacactcatgtatcattttatt-atcttttatcaatcta 52545202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 24807482 - 24807546
Alignment:
Q  420 aagagttagttacacaactaaactttatatatagaaacattcatgtatcattttattcatctttt 484  Q
    |||||||||||||||||||||| | ||||||||| |||| ||||||||||||| | |||||||||    
T  24807482 aagagttagttacacaactaaaatctatatataggaacactcatgtatcatttcaatcatctttt 24807546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 8005806 - 8005852
Alignment:
Q  385 actatagttagatagagtgtttgagaagcttggttaagagttagtta 431  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||    
T  8005806 actatagttagttagagtgtttgagaagcttggttaaggattagtta 8005852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 32866455 - 32866413
Alignment:
Q  69 aagagatgtgttatttgaacaattattttaatgacaacttttg 111  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  32866455 aagagttgtgttatttgaacaatcattttaatgacaacttttg 32866413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 336694 - 336745
Alignment:
Q  70 agagatgtgttatttgaacaattattttaatgacaacttttgataccaccat 121  Q
    |||| |||||||||||||||| | |||| ||||||||||||||||| |||||    
T  336694 agagttgtgttatttgaacaactttttttatgacaacttttgatacaaccat 336745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 51295222 - 51295273
Alignment:
Q  421 agagttagttacacaactaaactttatatatagaaacattcatgtatcattt 472  Q
    |||||||||||||||||||||| |||||||||| |||| | ||| |||||||    
T  51295222 agagttagttacacaactaaacattatatataggaacactaatgcatcattt 51295273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 19748819 - 19748777
Alignment:
Q  70 agagatgtgttatttgaacaattattttaatgacaacttttga 112  Q
    ||||||||||||||||||||||||||||  ||| |||||||||    
T  19748819 agagatgtgttatttgaacaattattttggtgataacttttga 19748777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 19790987 - 19791029
Alignment:
Q  70 agagatgtgttatttgaacaattattttaatgacaacttttga 112  Q
    ||||||||||||||||||||||||||||  ||| |||||||||    
T  19790987 agagatgtgttatttgaacaattattttggtgataacttttga 19791029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 6732772 - 6732731
Alignment:
Q  389 tagttagatagagtgtttgagaagcttggttaagagttagtt 430  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  6732772 tagttagttagagtatttgagaagtttggttaagagttagtt 6732731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 567
Target Start/End: Original strand, 25843550 - 25843623
Alignment:
Q  494 ttcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttca 567  Q
    |||||||||||  | ||||||||||| ||||||||||||| | | || ||| ||||||||||| ||||| ||||    
T  25843550 ttcaatatgaaacataaggattattcctttgtttctacctatcaagcttacctctcctatgaagttcatattca 25843623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 1627439 - 1627483
Alignment:
Q  67 aaaagagatgtgttatttgaacaattattttaatgacaacttttg 111  Q
    ||||||| |||||||||||||||| |||||  |||||||||||||    
T  1627439 aaaagagttgtgttatttgaacaactatttggatgacaacttttg 1627483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 12595514 - 12595558
Alignment:
Q  67 aaaagagatgtgttatttgaacaattattttaatgacaacttttg 111  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||    
T  12595514 aaaagagatgtgttatttgaacaaccattttgatgacaatttttg 12595558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 478 - 571
Target Start/End: Original strand, 11213 - 11306
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11213 atctttttcaatctaattcaatatgaattacaaggattattcctttgtttctacctctaaggcctacttctcctatgaacttcatcttcatctc 11306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 478 - 566
Target Start/End: Original strand, 9591 - 9679
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttc 566  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||    
T  9591 atctttttcaatctaattcaatatgaattacaaggattattcctctgtttctacctctaaggcctacttctcctatgaacttcatcttc 9679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 478 - 571
Target Start/End: Original strand, 34143065 - 34143158
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34143065 atctttttcaatctaattcaatatgaattacaaggattattcctttgtttctacctctaatgcctacttctcctatgaacttcaccttcatctc 34143158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 385 - 484
Target Start/End: Complemental strand, 35244036 - 35243937
Alignment:
Q  385 actatagttagatagagtgtttgagaagcttggttaagagttagttacacaactaaactttatatatagaaacattcatgtatcattttattcatctttt 484  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||| | |||||||||    
T  35244036 actatagttagttagagtgtttgagaagcttggttaagagttaattacacaactaaactctatatataggaacactcatgtatcatttcaatcatctttt 35243937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 385 - 484
Target Start/End: Original strand, 35244077 - 35244176
Alignment:
Q  385 actatagttagatagagtgtttgagaagcttggttaagagttagttacacaactaaactttatatatagaaacattcatgtatcattttattcatctttt 484  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| | |||||||||    
T  35244077 actatagttaattagagtgtttgagaagcttggttaagagttagttacacaactaaactctatatataggaacactcatgtatcatttcaatcatctttt 35244176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 478 - 571
Target Start/End: Original strand, 548210 - 548303
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||||||||||| ||||||||||||||    
T  548210 atctttttcattctaattcaatatgaattacaaggattattcctttgtttctatctctaatgtccacttctcctatgaagttcatcttcatctc 548303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 485
Target Start/End: Original strand, 41874414 - 41874522
Alignment:
Q  387 tatagttagatagagtgtttgagaagcttggtta----------agagttagttacacaactaaactttatatatagaaacattcatgtatcattttatt 476  Q
    ||||||||| |||||||||||||||| |||||||          ||||||||||||||||||||||| ||||||||| |||| ||||||| ||||| | |    
T  41874414 tatagttagttagagtgtttgagaagtttggttaagagttagttagagttagttacacaactaaactctatatataggaacactcatgtaccatttcaat 41874513  T
Q  477 catcttttt 485  Q
     ||||||||    
T  41874514 tatcttttt 41874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 6178309 - 6178365
Alignment:
Q  67 aaaagagatgtgttatttgaacaattattttaatgacaacttttgataccaccataa 123  Q
    ||||||| ||||||||||||||||  ||||| ||||||||||| ||||| |||||||    
T  6178309 aaaagagttgtgttatttgaacaaccatttttatgacaactttcgatacaaccataa 6178365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 567
Target Start/End: Complemental strand, 43819926 - 43819835
Alignment:
Q  478 atctttttcaatctaatt--caatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttca 567  Q
    |||||||||| |||||||  |||||||||||| ||||||||||||||||| || || | | |  | |||||||| |||||| ||||||||||    
T  43819926 atctttttcattctaattttcaatatgaattataaggattattcttttgtatcaacttatcaatcatacttctcttatgaaattcatcttca 43819835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 41637184 - 41637226
Alignment:
Q  69 aagagatgtgttatttgaacaattattttaatgacaacttttg 111  Q
    |||||||||| |||||||||||||||||| |||| ||||||||    
T  41637184 aagagatgtgctatttgaacaattattttgatgataacttttg 41637226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 819098 - 819142
Alignment:
Q  68 aaagagatgtgttatttgaacaattattttaatgacaacttttga 112  Q
    ||||||||||||||||| |||||  ||||| ||||||||||||||    
T  819098 aaagagatgtgttatttaaacaaccattttgatgacaacttttga 819142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 478 - 571
Target Start/End: Original strand, 1284946 - 1285039
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1284946 atctttttcaatctaattcaatatgaattacaaggattattcctttgtttctacctctaaggcctacttctcctatgaacttcatcttcatctc 1285039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 490 - 570
Target Start/End: Complemental strand, 35891473 - 35891393
Alignment:
Q  490 ctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatct 570  Q
    |||||||||||| ||| ||||||||||||| ||||| || |||||| ||| ||||||||||||||||||||| ||| ||||    
T  35891473 ctaattcaatataaatgacaaggattattcctttgtatcaacctctcatgtctacttctcctatgaacttcacctttatct 35891393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 33773105 - 33773149
Alignment:
Q  387 tatagttagatagagtgtttgagaagcttggttaagagttagtta 431  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||    
T  33773105 tatagttagttagagtgtttgagaagtttggttaagagttagtta 33773149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 902136 - 902187
Alignment:
Q  421 agagttagttacacaactaaactttatatatagaaacattcatgtatcattt 472  Q
    |||||||||||||||| |||||| | ||||||| |||| |||||||||||||    
T  902136 agagttagttacacaattaaactctctatataggaacactcatgtatcattt 902187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 33773149 - 33773200
Alignment:
Q  421 agagttagttacacaactaaactttatatatagaaacattcatgtatcattt 472  Q
    |||||||||||||| |||||||| ||||||||  |||| |||||||||||||    
T  33773149 agagttagttacacgactaaactctatatataagaacactcatgtatcattt 33773200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 45333483 - 45333440
Alignment:
Q  69 aagagatgtgttatttgaacaattattttaatgacaacttttga 112  Q
    ||||| |||||||||||||||||||||| | |||||||||||||    
T  45333483 aagagttgtgttatttgaacaattatttgattgacaacttttga 45333440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 31827140 - 31827079
Alignment:
Q  65 aaaaaagagatgtgttatttgaacaattattttaatgacaacttttgataccaccataattt 126  Q
    |||| |||| |||||||||||||||  |||||  ||||||||||||||||| |||| |||||    
T  31827140 aaaatagagttgtgttatttgaacatctatttagatgacaacttttgatacaaccaaaattt 31827079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 37187023 - 37186987
Alignment:
Q  77 tgttatttgaacaattattttaatgacaacttttgat 113  Q
    |||||||||||||||||||||||| | ||||||||||    
T  37187023 tgttatttgaacaattattttaataataacttttgat 37186987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 478 - 571
Target Start/End: Original strand, 25050981 - 25051074
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25050981 atctttttcaatttaattcaatatgaattacaaagattattcctttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 25051074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 6271572 - 6271475
Alignment:
Q  30 ttgtatgccgtacacataaaatgaagtggtgaaataaaaaagag-atgtgttatttgaacaattattttaatgacaacttttgataccaccataattt 126  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||| | ||||||||    
T  6271572 ttgtatgccgtagacataaaatgaagtggtgaaataaaaaagagtttgtgttatttgaacaaccattttaatgacaacttttgatacgatcataattt 6271475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 522 - 571
Target Start/End: Complemental strand, 6271369 - 6271320
Alignment:
Q  522 ttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6271369 ttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 6271320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 411 - 471
Target Start/End: Original strand, 14620550 - 14620610
Alignment:
Q  411 agcttggttaagagttagttacacaactaaactttatatatagaaacattcatgtatcatt 471  Q
    ||||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||    
T  14620550 agcttggttaagagttagttacacaactaaactctatatataggaaaactcatgtatcatt 14620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 14618983 - 14619034
Alignment:
Q  421 agagttagttacacaactaaactttatatatagaaacattcatgtatcattt 472  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  14618983 agagttagttacacaactaaactctatatataggaacactcatgtatcattt 14619034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 14611143 - 14611194
Alignment:
Q  421 agagttagttacacaactaaactttatatatagaaacattcatgtatcattt 472  Q
    ||||||||||||||||||||||| ||||||||| |||| || ||||||||||    
T  14611143 agagttagttacacaactaaactctatatataggaacactcgtgtatcattt 14611194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 524
Target Start/End: Original strand, 6232810 - 6232856
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttg 524  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||||    
T  6232810 atctttatcaatctaattcaatatgaaacacaaggattattcttttg 6232856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 570
Target Start/End: Original strand, 6257951 - 6258042
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatct 570  Q
    |||| |||||||||||| |||||||||  | ||||| ||||| ||||| || | || | | |||||||||||||||||| |||||||||||||    
T  6257951 atctctttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaattcatcttcatct 6258042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 480 - 571
Target Start/End: Complemental strand, 4897412 - 4897321
Alignment:
Q  480 ctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 571  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4897412 ctttttcattctaattcaatatgaattacaaggattattcctttgtttctacctctaatgcctacttctcctatgaagttcatcttcatctc 4897321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 379 - 453
Target Start/End: Original strand, 8080924 - 8080998
Alignment:
Q  379 tatttgactatagttagatagagtgtttgagaagcttggttaagagttagttacacaactaaactttatatatag 453  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  8080924 tattagactatagttagttagagtgtttgagaagcttggttaagagttagttacacaactaaactctctatatag 8080998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 265 - 379
Target Start/End: Complemental strand, 4921299 - 4921185
Alignment:
Q  265 taagaagcaagata-aatgagtaaatagtagcagaataaatattaagcaataaaagcaaggatattttgggtttttcaatcaaaaaattagtgtctctca 363  Q
    |||||||||| ||| |||||||||||||||| | |||||||||| | ||||||||||||||||||||| |  |||||||| ||||| |||||||  ||||    
T  4921299 taagaagcaatatacaatgagtaaatagtagtaaaataaatattgaccaataaaagcaaggatattttagacttttcaat-aaaaagttagtgttcctca 4921201  T
Q  364 acctttccttctatat 379  Q
    ||||||||||| ||||    
T  4921200 acctttccttccatat 4921185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 41697591 - 41697704
Alignment:
Q  266 aagaagcaagata-aatgagtaaatagtagcagaataaatattaagcaataaaagcaaggatattttgggtttttcaatcaaaaaattagtgtctctcaa 364  Q
    ||||||||| ||| |||||||||||||||| | |||||||||| | ||||||||||||||||||||| |  |||||||| ||||| |||||||  |||||    
T  41697591 aagaagcaatatacaatgagtaaatagtagtaaaataaatattgaccaataaaagcaaggatattttagacttttcaat-aaaaagttagtgttcctcaa 41697689  T
Q  365 cctttccttctatat 379  Q
    |||||||||| ||||    
T  41697690 cctttccttccatat 41697704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 21943580 - 21943621
Alignment:
Q  67 aaaagagatgtgttatttgaacaattattttaatgacaactt 108  Q
    ||||||| |||||||||| ||||| |||||||||||||||||    
T  21943580 aaaagagttgtgttatttaaacaactattttaatgacaactt 21943621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 35649874 - 35649911
Alignment:
Q  68 aaagagatgtgttatttgaacaattattttaatgacaa 105  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  35649874 aaagagatgtgttatttgaacaatcatttcaatgacaa 35649911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 478 - 566
Target Start/End: Original strand, 9919 - 10007
Alignment:
Q  478 atctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctaatgcctacttctcctatgaacttcatcttc 566  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||    
T  9919 atctttttcaatctaattcaatatgaattacaaggattattcctctgtttctacctctaaggcctacttctcctatgaacttcatcttc 10007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 387 - 484
Target Start/End: Original strand, 25302724 - 25302821
Alignment:
Q  387 tatagttagatagagtgtttgagaagcttggttaagagttagttacacaactaaactttatatatagaaacattcatgtatcattttattcatctttt 484  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||| | |||||||||    
T  25302724 tatagttagatagagtgtttgagaagtttggttaagagttagttacacaactaaactctatatataggatcactcatgtatcatttcaatcatctttt 25302821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 387 - 484
Target Start/End: Original strand, 25306719 - 25306816
Alignment:
Q  387 tatagttagatagagtgtttgagaagcttggttaagagttagttacacaactaaactttatatatagaaacattcatgtatcattttattcatctttt 484  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||| ||||||| ||||| | |||||||||    
T  25306719 tatagttagttagagtgtttgagaagtttggttaagagttagttacacagctaaactctatatataggaacactcatgtaacatttcaatcatctttt 25306816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 41602364 - 41602449
Alignment:
Q  387 tatagttagatagagtgtttgagaagcttggttaagagttagttacacaactaaactttatatatagaaacattcatgtatcattt 472  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||| |||| |||||||||||||    
T  41602364 tatagttagttagagtgtttgagaagtttggttaagagttagttacataactaaattctatatataggaacactcatgtatcattt 41602449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 31642329 - 31642236
Alignment:
Q  279 aatgagtaaatagtagcagaataaatattaagcaataaaagcaaggatattttgg-gtttttcaatcaaaaaattagtgtctctcaacctttcct 372  Q
    |||||||||||||||| | |||||||||| | |||||||||||||||||||||||  |||| |||| |||| ||||||||  |||||||||||||    
T  31642329 aatgagtaaatagtagtaaaataaatattgaccaataaaagcaaggatattttggacttttgcaat-aaaatattagtgttcctcaacctttcct 31642236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 31642386 - 31642346
Alignment:
Q  30 ttgtatgccgtacacataaaatgaagtggtgaaataaaaaa 70  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  31642386 ttgtatgccgtacacataaaatgaagcggtgaaataaaaaa 31642346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 39147949 - 39147909
Alignment:
Q  71 gagatgtgttatttgaacaattattttaatgacaacttttg 111  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  39147949 gagatgtgttatttgaacaaccattttaatgacaacttttg 39147909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 34844111 - 34844162
Alignment:
Q  421 agagttagttacacaactaaactttatatatagaaacattcatgtatcattt 472  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  34844111 agagttagttacacaactaaactctatatataggaacactcatgtatcattt 34844162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 39111042 - 39110991
Alignment:
Q  75 tgtgttatttgaacaattattttaatgacaacttttgataccaccataattt 126  Q
    |||||||||||||||||||||||||||||||||| ||| || | ||||||||    
T  39111042 tgtgttatttgaacaattattttaatgacaacttatgagacaatcataattt 39110991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 423 - 492
Target Start/End: Original strand, 39206 - 39275
Alignment:
Q  423 agttagttacacaactaaactttatatatagaaacattcatgtatcattttattcatctttt-tcaatcta 492  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||||| | ||||||||| ||||||||    
T  39206 agttagttacacaactaaactctatatataggaacactcatgtatcatttca-tcatcttttatcaatcta 39275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 39856223 - 39856182
Alignment:
Q  69 aagagatgtgttatttgaacaattattttaatgacaactttt 110  Q
    ||||| |||||||||||||||| ||||||||||| |||||||    
T  39856223 aagagttgtgttatttgaacaactattttaatgataactttt 39856182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5870 times since January 2019
Visitors: 5761