View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_high_22 (Length: 577)

Name: NF0809_high_22
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_high_22
NF0809_high_22
[»] chr1 (34 HSPs)
chr1 (109-573)||(38739406-38739870)
chr1 (7-110)||(35916472-35916575)
chr1 (109-269)||(19481526-19481686)
chr1 (134-307)||(35892335-35892504)
chr1 (117-278)||(35891831-35891988)
chr1 (109-176)||(19481222-19481289)
chr1 (367-528)||(38744120-38744280)
chr1 (109-176)||(21638400-21638468)
chr1 (179-269)||(40367698-40367788)
chr1 (119-176)||(15985192-15985249)
chr1 (109-176)||(482585-482651)
chr1 (110-176)||(35024589-35024655)
chr1 (123-176)||(14368906-14368959)
chr1 (123-176)||(2104408-2104461)
chr1 (253-327)||(3169793-3169864)
chr1 (126-176)||(11149581-11149631)
chr1 (254-307)||(9499289-9499342)
chr1 (242-307)||(26176952-26177017)
chr1 (255-308)||(29265996-29266049)
chr1 (240-304)||(25145693-25145757)
chr1 (255-307)||(35772073-35772125)
chr1 (255-310)||(5572666-5572721)
chr1 (126-176)||(40367471-40367521)
chr1 (126-176)||(40367814-40367864)
chr1 (255-305)||(51589852-51589902)
chr1 (242-307)||(4112981-4113046)
chr1 (268-305)||(11925091-11925128)
chr1 (240-305)||(27413393-27413458)
chr1 (242-295)||(38733207-38733260)
chr1 (242-306)||(30369880-30369944)
chr1 (255-307)||(33156777-33156829)
chr1 (255-307)||(39348341-39348392)
chr1 (242-306)||(51460417-51460481)
chr1 (255-307)||(51589270-51589322)
[»] chr2 (26 HSPs)
chr2 (123-269)||(30160137-30160283)
chr2 (129-269)||(901670-901810)
chr2 (252-307)||(10571014-10571069)
chr2 (126-182)||(901813-901869)
chr2 (109-176)||(10429679-10429744)
chr2 (179-269)||(29923410-29923497)
chr2 (109-176)||(2333492-2333559)
chr2 (134-176)||(39596846-39596888)
chr2 (242-307)||(15124758-15124823)
chr2 (119-176)||(30156111-30156168)
chr2 (242-307)||(40379419-40379484)
chr2 (123-175)||(15061418-15061469)
chr2 (255-307)||(28407781-28407833)
chr2 (255-307)||(31008559-31008611)
chr2 (256-307)||(93616-93667)
chr2 (255-324)||(5509109-5509175)
chr2 (126-176)||(25286418-25286468)
chr2 (240-306)||(33606262-33606328)
chr2 (119-176)||(35249832-35249887)
chr2 (242-307)||(93329-93394)
chr2 (242-307)||(2029813-2029878)
chr2 (242-307)||(14466385-14466450)
chr2 (242-307)||(16419311-16419376)
chr2 (254-307)||(17854916-17854969)
chr2 (255-307)||(2324284-2324336)
chr2 (271-307)||(2324518-2324554)
[»] chr8 (26 HSPs)
chr8 (122-269)||(7622006-7622150)
chr8 (137-230)||(21505089-21505182)
chr8 (119-213)||(7622170-7622264)
chr8 (109-176)||(7621805-7621872)
chr8 (110-215)||(3537772-3537876)
chr8 (197-269)||(43984236-43984308)
chr8 (255-307)||(17469862-17469914)
chr8 (255-307)||(34842722-34842774)
chr8 (128-176)||(36994095-36994143)
chr8 (268-327)||(12547125-12547181)
chr8 (127-176)||(43984531-43984580)
chr8 (255-307)||(19256808-19256860)
chr8 (126-174)||(43984474-43984522)
chr8 (255-306)||(3157547-3157598)
chr8 (268-307)||(17477109-17477148)
chr8 (254-308)||(27439534-27439588)
chr8 (242-307)||(11232169-11232234)
chr8 (242-307)||(11232404-11232469)
chr8 (268-305)||(15042671-15042708)
chr8 (242-307)||(39052904-39052969)
chr8 (255-307)||(4828112-4828164)
chr8 (242-324)||(8084157-8084236)
chr8 (255-307)||(10884109-10884160)
chr8 (255-307)||(24532409-24532461)
chr8 (255-307)||(37001270-37001322)
chr8 (255-307)||(41790703-41790754)
[»] chr3 (17 HSPs)
chr3 (109-269)||(38300583-38300744)
chr3 (123-250)||(38300432-38300560)
chr3 (109-268)||(31563833-31563994)
chr3 (123-269)||(33909476-33909622)
chr3 (129-269)||(48407598-48407744)
chr3 (126-251)||(21750291-21750421)
chr3 (123-231)||(53981750-53981858)
chr3 (243-307)||(4155368-4155432)
chr3 (126-176)||(48407753-48407803)
chr3 (254-307)||(16926936-16926989)
chr3 (242-307)||(54567936-54568001)
chr3 (255-307)||(1723064-1723116)
chr3 (255-307)||(11589829-11589881)
chr3 (265-308)||(47702407-47702450)
chr3 (255-296)||(21833403-21833444)
chr3 (255-307)||(16239635-16239687)
chr3 (117-157)||(50095138-50095178)
[»] chr4 (38 HSPs)
chr4 (129-252)||(21497900-21498023)
chr4 (119-173)||(27048552-27048606)
chr4 (116-176)||(28085636-28085696)
chr4 (166-269)||(27048300-27048400)
chr4 (242-308)||(17111606-17111672)
chr4 (109-162)||(34206123-34206176)
chr4 (166-269)||(34206147-34206247)
chr4 (119-176)||(34206395-34206452)
chr4 (242-307)||(50543542-50543607)
chr4 (126-182)||(7193560-7193616)
chr4 (255-307)||(25052896-25052948)
chr4 (255-307)||(34358018-34358070)
chr4 (129-176)||(7193510-7193557)
chr4 (126-176)||(41176602-41176652)
chr4 (254-307)||(12869250-12869303)
chr4 (111-160)||(27048278-27048327)
chr4 (252-292)||(11786959-11786999)
chr4 (252-292)||(11799126-11799166)
chr4 (255-307)||(14783175-14783227)
chr4 (116-160)||(20545810-20545854)
chr4 (255-307)||(22231296-22231348)
chr4 (255-307)||(40717429-40717481)
chr4 (255-307)||(50543318-50543370)
chr4 (268-307)||(12869030-12869069)
chr4 (268-307)||(28245527-28245566)
chr4 (126-176)||(21497841-21497891)
chr4 (126-176)||(21498083-21498133)
chr4 (126-176)||(38908013-38908063)
chr4 (258-307)||(5846190-5846239)
chr4 (242-307)||(6218248-6218313)
chr4 (167-204)||(20545828-20545865)
chr4 (255-296)||(24513348-24513389)
chr4 (123-176)||(51564816-51564869)
chr4 (255-307)||(1518208-1518260)
chr4 (255-307)||(9685442-9685494)
chr4 (255-307)||(21498398-21498450)
chr4 (255-307)||(35788703-35788755)
chr4 (255-307)||(53814917-53814969)
[»] chr7 (23 HSPs)
chr7 (109-269)||(12524947-12525103)
chr7 (151-269)||(13788746-13788861)
chr7 (126-269)||(12524649-12524788)
chr7 (109-176)||(12524440-12524507)
chr7 (109-176)||(14690979-14691046)
chr7 (255-307)||(6782905-6782957)
chr7 (110-182)||(12518315-12518387)
chr7 (169-251)||(43288394-43288473)
chr7 (123-182)||(12578618-12578677)
chr7 (240-307)||(40121897-40121964)
chr7 (255-327)||(33996299-33996368)
chr7 (242-307)||(10903129-10903194)
chr7 (242-307)||(25620180-25620245)
chr7 (242-307)||(29469649-29469714)
chr7 (255-307)||(31257255-31257307)
chr7 (144-176)||(48116456-48116488)
chr7 (254-327)||(26562060-26562130)
chr7 (268-310)||(43085538-43085580)
chr7 (255-307)||(3038072-3038124)
chr7 (255-303)||(10882227-10882275)
chr7 (255-307)||(17202223-17202275)
chr7 (119-159)||(30296506-30296546)
chr7 (255-307)||(34027437-34027489)
[»] chr6 (19 HSPs)
chr6 (141-248)||(18779573-18779679)
chr6 (126-200)||(1469155-1469229)
chr6 (240-327)||(7638821-7638905)
chr6 (255-307)||(4868801-4868853)
chr6 (255-307)||(8026433-8026485)
chr6 (254-306)||(10145737-10145789)
chr6 (255-307)||(30256856-30256908)
chr6 (184-269)||(5557194-5557276)
chr6 (258-305)||(21690768-21690815)
chr6 (254-327)||(24554144-24554214)
chr6 (268-307)||(25065095-25065134)
chr6 (242-307)||(12330154-12330219)
chr6 (242-307)||(13353245-13353310)
chr6 (242-307)||(33796370-33796435)
chr6 (255-307)||(9705064-9705116)
chr6 (255-307)||(13740725-13740777)
chr6 (255-307)||(13746225-13746277)
chr6 (255-307)||(27653261-27653313)
chr6 (255-307)||(30256622-30256674)
[»] chr5 (24 HSPs)
chr5 (169-269)||(4465080-4465177)
chr5 (255-306)||(1564555-1564606)
chr5 (234-304)||(1028365-1028435)
chr5 (131-176)||(14029002-14029047)
chr5 (242-307)||(25258276-25258341)
chr5 (242-307)||(25322066-25322131)
chr5 (255-307)||(2063722-2063774)
chr5 (255-299)||(17016385-17016429)
chr5 (255-307)||(41666981-41667033)
chr5 (129-176)||(12965400-12965447)
chr5 (255-324)||(15480352-15480418)
chr5 (258-305)||(20225087-20225134)
chr5 (121-159)||(13843890-13843928)
chr5 (255-296)||(1564497-1564538)
chr5 (254-307)||(13701055-13701108)
chr5 (255-296)||(17150456-17150497)
chr5 (258-310)||(2986003-2986055)
chr5 (238-306)||(7133981-7134048)
chr5 (255-307)||(8081101-8081153)
chr5 (255-307)||(8098361-8098413)
chr5 (255-307)||(18333687-18333739)
chr5 (255-307)||(24528584-24528636)
chr5 (255-307)||(29909709-29909761)
chr5 (240-304)||(43117694-43117758)
[»] scaffold0045 (1 HSPs)
scaffold0045 (255-305)||(41194-41244)
[»] scaffold0048 (1 HSPs)
scaffold0048 (242-307)||(81886-81951)
[»] scaffold0005 (1 HSPs)
scaffold0005 (255-307)||(56503-56555)
[»] scaffold0692 (1 HSPs)
scaffold0692 (242-307)||(5729-5794)
[»] scaffold0519 (1 HSPs)
scaffold0519 (242-307)||(1960-2025)
[»] scaffold0129 (1 HSPs)
scaffold0129 (242-307)||(14347-14412)
[»] scaffold0092 (1 HSPs)
scaffold0092 (255-307)||(5699-5751)


Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 109 - 573
Target Start/End: Complemental strand, 38739870 - 38739406
Alignment:
Q  109 ctagggccaaatcacaattaagg-tgggattaccaacacaccccctcacgctcggggcg--ggatttccaatacaccccctcacgctcagacccaatggg 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||    
T  38739870 ctagggccaaatcacaattaagggtgggattaccaacacaccccctcacgctcggggggtgggatttccaatacaccccctcacgctcagacccaatggg 38739771  T
Q  206 catcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaa 305  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  38739770 catgaagcatcgtaatgcggaatcccgacaacggtagatcttggataaactcttatattatgttagaaatcgtagttgagcctaacacaacaccacaaaa 38739671  T
Q  306 ccaacagcttgtgaggtgaagacaatttctaacattcacctccattccgaaacaaaaaagttacttctcttttcactcgattggcaaaatattatacagg 405  Q
    ||    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38739670 ccg---gcttgtgaggtggagacaatttctaacattcacctccattccgaaacaaaaaagttacttctcttttcattcgattggcaaaatattatacagg 38739574  T
Q  406 gattttctttattttctcatgtaatatatactccaaagtaaccatcctttcatatatcacatttgtctctcgatttgatcttttgctgtctattccttat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38739573 gattttctttattttctcatgtaatatatactccaaagtaaccatcctttcatatatcacatttgtctctcgatttgatcttttgctgtctattccttat 38739474  T
Q  506 tgtcatgtattgcctctttatattcaactttccttttttgtaactatattcaactctcacaccaatct 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38739473 tgtcatgtattgcctctttatattcaactttccttttttgtaactatattcagctctcacaccaatct 38739406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 35916575 - 35916472
Alignment:
Q  7 cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916575 cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac 35916476  T
Q  107 agct 110  Q
    ||||    
T  35916475 agct 35916472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 109 - 269
Target Start/End: Original strand, 19481526 - 19481686
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcat 208  Q
    |||||| || ||| ||||||||||| |||||||||||||| |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  19481526 ctaggggcagatcgcaattaaggtgagattaccaacacacaccctcacgctcggggcagggtttccaacacaccccctcacgctcagacccaatgggcat 19481625  T
Q  209 caagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
      ||||| | ||||||||||||||| || |||||||||||||||  ||||| || ||||||    
T  19481626 ggagcgtggcaatgcggaatcccgaaaatggtagatcttggataggctctggtaccatgtt 19481686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 134 - 307
Target Start/End: Complemental strand, 35892504 - 35892335
Alignment:
Q  134 ggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccga 233  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||| | |||||||||||| ||| || | ||||||||||||       
T  35892504 ggattaccaacacaccctctcacgctcggggcgggatttccaacacaactcctcacgctc-ggcccaatgggcatgaagtgtggcaatgcggaatcc--- 35892409  T
Q  234 caacggtagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||| |||||||||||||| ||||||||| ||| ||||||||  | ||||||||||||| ||| ||||||||||    
T  35892408 caacagtagatcttggatagactctgataccatcttagaaattatggttgagcctaacagaaccccacaaaacc 35892335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 117 - 278
Target Start/End: Complemental strand, 35891988 - 35891831
Alignment:
Q  117 aaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtc 216  Q
    |||||||||| |||||||||||||||||||| ||  |||||||||||||  ||||| ||| | | ||| ||||||||||||| ||||||||| ||||||     
T  35891988 aaatcacaataaaggtgggattaccaacacatcctttcacgctcggggcatgattttcaacagatcccttcacgctcagaccaaatgggcatgaagcgtg 35891889  T
Q  217 gtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgttagaaatcgt 278  Q
    | ||||  |||||     || |||||||||||||||| |||||||| |||||||||||||||    
T  35891888 gcaatgaagaatc----taatggtagatcttggataagctctgataccatgttagaaatcgt 35891831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 19481289 - 19481222
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19481289 ctaggggcagatcgcaattaaggtgggattaccaacacaccccctcacactcggggcgggatttccaa 19481222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 367 - 528
Target Start/End: Complemental strand, 38744280 - 38744120
Alignment:
Q  367 tacttctcttttcactcgattggcaaaatattatacagggat---tttctttattttctcat-gtaatatatactccaaagtaaccatcctttcatatat 462  Q
    |||||||||||||| | || || || |||||| |||||||||   |||||| |||||||||| ||||| |||||||||||    ||||| || || || |    
T  38744280 tacttctcttttcatttgaatgacagaatattctacagggatcattttcttcattttctcattgtaatgtatactccaaa----ccatcatt-caaatgt 38744186  T
Q  463 cacatttgtctctcgatttgatcttttgctgtctattccttattgtcatgtattgcctctttatat 528  Q
    |||||||||||||| |||| |||||||||||||  |||||||||||| | ||||||||||||||||    
T  38744185 cacatttgtctctcaattttatcttttgctgtcagttccttattgtcctctattgcctctttatat 38744120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 21638400 - 21638468
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcg-gggcgggatttccaa 176  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  21638400 ctaggggcagatcacaattaaggtgggattaccaacacaccccctcacggtcgagggcgggatttccaa 21638468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 40367788 - 40367698
Alignment:
Q  179 caccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    ||||||||||||||||| |||||| ||||| |||||| | |||||||||||| |||||||||||||| ||||||  ||| |||| ||||||    
T  40367788 caccccctcacgctcaggcccaatcggcatgaagcgtggcaatgcggaatcctgacaacggtagatcctggataggctcagataccatgtt 40367698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 15985249 - 15985192
Alignment:
Q  119 atcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  15985249 atcacaattaaggtgggattaccaacacacctcctcacgcccggggcggggtttccaa 15985192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 482651 - 482585
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| || ||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  482651 ctaggggcagatcgcaatcaaggtgggattacca-cacaccccctcacgctcggggcgggatttccaa 482585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 35024589 - 35024655
Alignment:
Q  110 tagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||| || ||| |||| |||||||||||||||||||||||||||||||| |||| |||||||||||    
T  35024589 taggggcagatcgcaataaaggtgggattaccaacacaccccctcacgcttggggtgggatttccaa 35024655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 14368906 - 14368959
Alignment:
Q  123 caattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||||||||||||||||||||||||||||||| || |||| |||||||||||    
T  14368906 caattaaggtgggattaccaacacaccccctcactcttggggagggatttccaa 14368959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 2104408 - 2104461
Alignment:
Q  123 caattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||    
T  2104408 caattaagatggaattaccaacccaccccctcacgttcggggcgggatttccaa 2104461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 3169864 - 3169793
Alignment:
Q  253 aactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaacagcttgtgaggtgaaga 327  Q
    |||||||||| ||| ||||||||||| |||| |||||||||||| |||||||||   | ||||||||||||||||    
T  3169864 aactctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaac---cggcttgtgaggtgaaga 3169793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 11149581 - 11149631
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| ||||||||| |||||||||||  ||||||||||||||||||    
T  11149581 ttaaggtggaattaccaacccaccccctcacattcggggcgggatttccaa 11149631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 9499342 - 9499289
Alignment:
Q  254 actctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||||||| ||||||||||| |||||| | |||||||| ||||||||||    
T  9499342 actctgatatcattttagaaatcgtggttgagtcgaacacaaccccacaaaacc 9499289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 26177017 - 26176952
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||||||| ||||||||||  |||| |||||||||||| ||||||||||    
T  26177017 gatcttggagaggctctgatatcatcttagaaatcgcggttgggcctaacacaaccccacaaaacc 26176952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 29266049 - 29265996
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacca 308  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| |||||||||||    
T  29266049 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacca 29265996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 25145693 - 25145757
Alignment:
Q  240 tagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaa 304  Q
    ||||||||||| |  |||||||||||| ||||||||| | |||| |||||||||||| |||||||    
T  25145693 tagatcttggagaggctctgatatcatcttagaaatcatggttgggcctaacacaaccccacaaa 25145757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 35772125 - 35772073
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  35772125 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 35772073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 5572721 - 5572666
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaac 310  Q
    |||| ||| ||| |||||||||||||||| || ||||||||| |||||||||||||    
T  5572721 ctctaataccattttagaaatcgtagttgggcttaacacaaccccacaaaaccaac 5572666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 40367521 - 40367471
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| ||||||||| |||||||||||  |||||| |||||||||||    
T  40367521 ttaaggtggaattaccaacccaccccctcacattcggggtgggatttccaa 40367471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 40367864 - 40367814
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| ||||||||| |||||||||||  |||||| |||||||||||    
T  40367864 ttaaggtggaattaccaacccaccccctcacattcggggtgggatttccaa 40367814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 51589902 - 51589852
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaa 305  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||    
T  51589902 ctctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaa 51589852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 4112981 - 4113046
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  ||| |||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  4112981 gatcttggagaggctccgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 4113046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 11925128 - 11925091
Alignment:
Q  268 ttagaaatcgtagttgagcctaacacaacaccacaaaa 305  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  11925128 ttagaaatcgtggttgagcctaacacaactccacaaaa 11925091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 27413458 - 27413393
Alignment:
Q  240 tagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaa 305  Q
    ||||||||||| |  |||||||||||| ||||||||||| ||||  |||||||||||  |||||||    
T  27413458 tagatcttggagaggctctgatatcatcttagaaatcgtggttggacctaacacaacctcacaaaa 27413393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 38733260 - 38733207
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaa 295  Q
    ||||||||| | ||||||||| ||| ||||||||||| ||||| ||||||||||    
T  38733260 gatcttggagagactctgataccatcttagaaatcgtggttgaacctaacacaa 38733207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 30369944 - 30369880
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaac 306  Q
    ||||||||| |  ||||||||  || ||||||||||| |||| |||||||||||| |||||||||    
T  30369944 gatcttggagaggctctgatacaatcttagaaatcgtggttgggcctaacacaaccccacaaaac 30369880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 33156829 - 33156777
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||| ||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  33156829 ctctaataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 33156777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 39348341 - 39348392
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  39348341 ctctgataccatcttagaaatcgt-gttgggcctaacacaaccccacaaaacc 39348392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 51460417 - 51460481
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaac 306  Q
    ||||||||| |  |||||||||||| ||||||||  | |||| |||||||||||| |||||||||    
T  51460417 gatcttggagaggctctgatatcattttagaaattatggttgggcctaacacaaccccacaaaac 51460481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 51589322 - 51589270
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||  |||||||||||| ||||||||||    
T  51589322 ctctgataccatattagaaatcgtggttaggcctaacacaaccccacaaaacc 51589270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 123 - 269
Target Start/End: Complemental strand, 30160283 - 30160137
Alignment:
Q  123 caattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatg 222  Q
    |||||||| ||| ||||| ||| |||||||||||  |||||||||||||||||| |  |||||||||||||||||||||||||||| |||||| | ||||    
T  30160283 caattaagatggaattactaacccaccccctcacattcggggcgggatttccaacatcccccctcacgctcagacccaatgggcatgaagcgtggcaatg 30160184  T
Q  223 cggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||    
T  30160183 cggaatcccgacaacggtagatcttggataggctctgataccatgtt 30160137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 901810 - 901670
Alignment:
Q  129 aggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaat 228  Q
    |||||| ||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||||| ||| |||||||| |||||| | ||||||||||    
T  901810 aggtggaattaccaacccaccccctcacgtttggggcgggatttccaacacaccccctcacgctcaggcccgatgggcatgaagcgtggcaatgcggaat 901711  T
Q  229 cccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    ||| ||||||||||||| ||||||  |||||||| ||||||    
T  901710 cccaacaacggtagatcctggataggctctgataccatgtt 901670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 10571069 - 10571014
Alignment:
Q  252 aaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||    
T  10571069 aaactctgataccatcttagaaatcgtggttgagcctaacacaaccccacaaaacc 10571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 901869 - 901813
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacacc 182  Q
    ||||||||| ||||||||| |||||||||||  |||||||||||||||||| |||||    
T  901869 ttaaggtggaattaccaacccaccccctcacattcggggcgggatttccaacacacc 901813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 10429744 - 10429679
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| || ||| |||||||||||||||||||||||||| ||||||||  ||||| |||||||||||    
T  10429744 ctaggggcagatcgcaattaaggtgggattaccaacacacaccctcacg--cggggtgggatttccaa 10429679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 29923497 - 29923410
Alignment:
Q  179 caccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    ||||| |||| ||||||||||||||||| | ||| || | ||||||||||||||   |||||||||||||||||  |||||||| ||||||    
T  29923497 cacccactcatgctcagacccaatgggcctgaagtgtggcaatgcggaatcccg---acggtagatcttggataggctctgataccatgtt 29923410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 2333492 - 2333559
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| | ||  ||||||||||||||    
T  2333492 ctaggggcaaattgcaattaaggtgtgattaccaacacaccccctcatgttcaaggcgggatttccaa 2333559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 39596846 - 39596888
Alignment:
Q  134 ggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  39596846 ggattaccaacacactccctcacgctcggagcgggatttccaa 39596888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 15124758 - 15124823
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| | ||||||||| ||| ||||||||||| |||| | |||||||||| ||||||||||    
T  15124758 gatcttggagagactctgataccatcttagaaatcgtggttgggtctaacacaaccccacaaaacc 15124823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 30156168 - 30156111
Alignment:
Q  119 atcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||||||||| ||| ||||| ||| |||||||||||| |||||||| |||||||||    
T  30156168 atcacaattaagatggaattactaacccaccccctcacgttcggggcgagatttccaa 30156111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 40379419 - 40379484
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  40379419 gatcttggaaaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 40379484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 15061418 - 15061469
Alignment:
Q  123 caattaaggtgggattaccaacacaccccctcacgctcggggcgggatttcca 175  Q
    ||||||||||||  |||||||||| |||||||| |||||||||||||||||||    
T  15061418 caattaaggtggt-ttaccaacaccccccctcatgctcggggcgggatttcca 15061469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 28407781 - 28407833
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  28407781 ctctgataccatcttagaaatcgtggttgggcctaacacaactccacaaaacc 28407833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 31008559 - 31008611
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||||||| |||||||  || ||||||||||||||||| ||||||||||    
T  31008559 ctctgatatcattttagaaactgtggttgagcctaacacaaccccacaaaacc 31008611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 93616 - 93667
Alignment:
Q  256 tctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  93616 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 93667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 5509175 - 5509109
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaacagcttgtgaggtga 324  Q
    |||||||| ||| ||||||||| | |||| |||||||||||| |||||||||   |||||||||||||||    
T  5509175 ctctgataccatattagaaatcatggttgggcctaacacaaccccacaaaac---cagcttgtgaggtga 5509109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 25286418 - 25286468
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| ||||||||| |||||||||||  |||||| |||||||||||    
T  25286418 ttaaggtggaattaccaacccaccccctcacattcggggtgggatttccaa 25286468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 33606262 - 33606328
Alignment:
Q  240 tagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaac 306  Q
    ||||||||| | | ||| ||||||||| ||||||||||| |||| |||||||| ||| |||||||||    
T  33606262 tagatcttgaagagactttgatatcatcttagaaatcgtggttgtgcctaacataacgccacaaaac 33606328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 35249832 - 35249887
Alignment:
Q  119 atcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||||| ||| || ||||||||||||  |||||||||||||||| |||||||||||    
T  35249832 atcacaataaagatgagattaccaacac--cccctcacgctcggggtgggatttccaa 35249887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 93329 - 93394
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||| ||||||| |||| |||||||||||| ||||||||||    
T  93329 gatcttggagaggctctgataccatcttaaaaatcgtggttgggcctaacacaaccccacaaaacc 93394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 2029878 - 2029813
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| |||||| ||||| ||||||||||    
T  2029878 gatcttggagaggctctgataccatcttagaaatcgtggttgggcctaaaacaaccccacaaaacc 2029813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 14466385 - 14466450
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| |||||||| || |||| |||||||||||| ||||||||||    
T  14466385 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaacc 14466450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 16419376 - 16419311
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| |||||| ||||| ||||||||||    
T  16419376 gatcttggagaggctctgataccatcttagaaatcgtggttgggcctaatacaaccccacaaaacc 16419311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 17854916 - 17854969
Alignment:
Q  254 actctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||||||| ||||||||||| |||| | ||| |||||| ||||||||||    
T  17854916 actctgatatcatattagaaatcgtggttgggtctagcacaaccccacaaaacc 17854969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 2324336 - 2324284
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||| ||||||| |||| |||||||||||| ||||||||||    
T  2324336 ctctgataccatattaaaaatcgtggttgggcctaacacaaccccacaaaacc 2324284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 2324554 - 2324518
Alignment:
Q  271 gaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  2324554 gaaatcgtggttgagcctaacacaaccccacaaaacc 2324518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 122 - 269
Target Start/End: Complemental strand, 7622150 - 7622006
Alignment:
Q  122 acaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaat 221  Q
    ||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |||  ||||||||||||| |||||| | |||    
T  7622150 acaatgaaggtgggattaccaacacaccccctcacgtttggggcgggatttccaacacaccccctcacactcttacccaatgggcatgaagcgtggcaat 7622051  T
Q  222 gcggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    |||||||||   ||| |||||||||||||||  |||||||| ||||||    
T  7622050 gcggaatcc---caagggtagatcttggataggctctgataccatgtt 7622006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 21505089 - 21505182
Alignment:
Q  137 ttaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcc 230  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| || | ||||| ||||||    
T  21505089 ttaccaacacaccccctaacgctcggggcgggatttccaaaacaccccctcacgctcggacccaatgggcatgaagtgtggcaatgctgaatcc 21505182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 7622264 - 7622170
Alignment:
Q  119 atcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagc 213  Q
    |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| |||||| |||   |||||||||||| ||||    
T  7622264 atcacaatgaaggtgggattaccaacgcaccccctcacgttcggggcgggatttccaacacacctcctcacactctagcccaatgggcatgaagc 7622170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 7621872 - 7621805
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  7621872 ctagggacaaatcacaattaaggtgggattaccaacgcaccccctcacgcttggggcgggttttccaa 7621805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 3537876 - 3537772
Alignment:
Q  110 tagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatc 209  Q
    ||||| || |||||||||||| |||||||||||||||| ||| ||| |||  ||||| ||||||||| |||| |||||| ||| |||||||||||||||     
T  3537876 tagggacatatcacaattaagatgggattaccaacacaaccc-tcatgcttagggcgagatttccaacacacaccctcatgctaagacccaatgggcatg 3537778  T
Q  210 aagcgt 215  Q
    ||||||    
T  3537777 aagcgt 3537772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 43984236 - 43984308
Alignment:
Q  197 cccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    |||||||||||| |||||| | |||||||||||||||||||| |||||| ||||||  |||||||| ||||||    
T  43984236 cccaatgggcatgaagcgtggcaatgcggaatcccgacaacgttagatcctggataggctctgataccatgtt 43984308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 17469914 - 17469862
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||    
T  17469914 ctctgataccatattagaaatcgtggttgagcctaacacaaccccacaaaacc 17469862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 34842774 - 34842722
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||    
T  34842774 ctctgataccatattagaaatcgtggttgagcctaacacaaccccacaaaacc 34842722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 36994095 - 36994143
Alignment:
Q  128 aaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||||||||||| ||||||||||||||||||||||| | ||||||||    
T  36994095 aaggtgggattaccgacacaccccctcacgctcggggcagaatttccaa 36994143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 12547181 - 12547125
Alignment:
Q  268 ttagaaatcgtagttgagcctaacacaacaccacaaaaccaacagcttgtgaggtgaaga 327  Q
    |||||||||||||||| |||||||||||| |||||||||   | ||||||||||||||||    
T  12547181 ttagaaatcgtagttgggcctaacacaaccccacaaaac---cggcttgtgaggtgaaga 12547125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 43984531 - 43984580
Alignment:
Q  127 taaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||||| ||||||||| |||||||||| | ||||||||||||||||||    
T  43984531 taaggtggaattaccaacccaccccctcatgttcggggcgggatttccaa 43984580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 19256808 - 19256860
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  19256808 ctctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaacc 19256860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 43984474 - 43984522
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttcc 174  Q
    ||||||||| ||||||||| |||||||||||  ||||||||||||||||    
T  43984474 ttaaggtggaattaccaacccaccccctcacattcggggcgggatttcc 43984522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 3157547 - 3157598
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaac 306  Q
    |||||||||||| ||| |||| || ||||||||||||||||| |||||||||    
T  3157547 ctctgatatcatcttataaatggtggttgagcctaacacaaccccacaaaac 3157598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 17477148 - 17477109
Alignment:
Q  268 ttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  17477148 ttagaaatcgtggttgagcctaacacaaccccacaaaacc 17477109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 27439534 - 27439588
Alignment:
Q  254 actctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacca 308  Q
    ||||||||| ||| ||| || |||||||||||||| ||||||| |||||||||||    
T  27439534 actctgataccatcttaaaactcgtagttgagcctgacacaacgccacaaaacca 27439588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 11232169 - 11232234
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| |||||||| || |||| |||||||||||| ||||||||||    
T  11232169 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaacc 11232234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 11232404 - 11232469
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| |||||||| || |||| |||||||||||| ||||||||||    
T  11232404 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaacc 11232469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 15042671 - 15042708
Alignment:
Q  268 ttagaaatcgtagttgagcctaacacaacaccacaaaa 305  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  15042671 ttagaaatcgtggttgagcctaacacaaccccacaaaa 15042708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 39052904 - 39052969
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||| ||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  39052904 gatcttggagaggctctaataccatcttagaaatcgttgttgggcctaacacaaccccacaaaacc 39052969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 4828164 - 4828112
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||| ||||| |||| |||||||||||| ||||||||||    
T  4828164 ctctgataccatattagagatcgtggttgggcctaacacaaccccacaaaacc 4828112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 8084236 - 8084157
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaacagcttgtgaggtga 324  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| | |||||||||| || ||||||   |||||||||||||||    
T  8084236 gatcttggagaggctctgataccatcttagaaatcgtggttgggtctaacacaactccgcaaaac---cagcttgtgaggtga 8084157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 10884160 - 10884109
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  10884160 ctctgataccatcttagaaatcgtggttgggcctaacacaac-ccacaaaacc 10884109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 24532409 - 24532461
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||| | |||| |||||||||||| ||||||||||    
T  24532409 ctctgataccatcttagaaatcatggttgggcctaacacaaccccacaaaacc 24532461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 37001322 - 37001270
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| || |||||||| |||| |||||||||||| ||||||||||    
T  37001322 ctctgataccatctttgaaatcgtggttgggcctaacacaactccacaaaacc 37001270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 41790754 - 41790703
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  41790754 ctctgataccatcttagaaatcgtggttgggcctaacacaac-ccacaaaacc 41790703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 109 - 269
Target Start/End: Original strand, 38300583 - 38300744
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaa-cacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggca 207  Q
    |||||| || ||| ||||||||||||  ||||||| |||||||||||||  |||||||| ||||||||| |||| ||||||| |||||||| ||||||||    
T  38300583 ctaggggcagatcgcaattaaggtggtcttaccaaacacaccccctcactttcggggcgagatttccaacacacaccctcacactcagacctaatgggca 38300682  T
Q  208 tcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    |  ||||| | ||||||||||||||||||||||||||| ||||||  |||||||| ||||||    
T  38300683 tgtagcgtggcaatgcggaatcccgacaacggtagatcctggataggctctgataccatgtt 38300744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 38300432 - 38300560
Alignment:
Q  123 caattaaggtgggattaccaa-cacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaat 221  Q
    ||||||||||||  ||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||||||||| |||||||||  ||||| | |||    
T  38300432 caattaaggtggtcttaccaaacacaccccctcactttcggggcgagatttccaacacaccccctcacgctcagacctaatgggcatgtagcgtggcaat 38300531  T
Q  222 gcggaatcccgacaacggtagatcttgga 250  Q
    |||||||||||||||||||||||| ||||    
T  38300532 gcggaatcccgacaacggtagatcctgga 38300560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 109 - 268
Target Start/End: Original strand, 31563833 - 31563994
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgc--tcggggcgggatttccaatacaccccctcacgctcagacccaatgggc 206  Q
    |||||| || ||| |||||||||||| |||||||||||||| |||  |||  |   || ||||||||||| ||||||||||| ||||||||||||||| |    
T  31563833 ctaggggcagatcgcaattaaggtggaattaccaacacacctcctatcgcaattaaggtgggatttccaacacaccccctcatgctcagacccaatggac 31563932  T
Q  207 atcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgt 268  Q
    ||  ||||| | ||||||||||||||||||||||||||||||||||  |||||||| |||||    
T  31563933 atgtagcgtggcaatgcggaatcccgacaacggtagatcttggataggctctgataccatgt 31563994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 123 - 269
Target Start/End: Original strand, 33909476 - 33909622
Alignment:
Q  123 caattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatg 222  Q
    |||| |||||||||||||||||||| |||||||| || ||||  |||||||||| |||| ||||| | |||||| |||| |||||| |||||| | ||||    
T  33909476 caataaaggtgggattaccaacacatcccctcacacttgggggaggatttccaacacactccctcgcactcagatccaacgggcatgaagcgtggcaatg 33909575  T
Q  223 cggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    |||||||||||||||||| |||||||||||   ||||||| ||||||    
T  33909576 cggaatcccgacaacggtggatcttggataggatctgataccatgtt 33909622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 48407744 - 48407598
Alignment:
Q  129 aggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagaccc------aatgggcatcaagcgtcgtaatg 222  Q
    |||||| ||||||||| ||||||||||   || |||||| |||||||| ||||||||||| |||||| |||      ||||||||| |||||| | ||||    
T  48407744 aggtggaattaccaacccaccccctcatattcagggcggaatttccaacacaccccctcatgctcaggcccgggcccaatgggcatgaagcgtggcaatg 48407645  T
Q  223 cggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||||||    
T  48407644 cggaatcccgacaacggtagatcctggataggctctgataccatgtt 48407598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 251
Target Start/End: Complemental strand, 21750421 - 21750291
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagac-----ccaatgggcatcaagcgtcgtaa 220  Q
    ||||||||| ||||||||  || ||||||||| | | |||||||||||| | |||||||||||||||||| |     || |||||||| |||||| | ||    
T  21750421 ttaaggtggaattaccaatccatcccctcacgtttgaggcgggatttccgacacaccccctcacgctcaggcctaggcccatgggcatgaagcgtggcaa 21750322  T
Q  221 tgcggaatcccgacaacggtagatcttggat 251  Q
    |||||||||||||||||||| |||| |||||    
T  21750321 tgcggaatcccgacaacggttgatcctggat 21750291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 53981858 - 53981750
Alignment:
Q  123 caattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatg 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||| ||||||||||  |||| ||||| | | | |||||||||||||| ||| || | | ||    
T  53981858 caataaaggtgggattaccgacacacaccctcacgctcggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattg 53981759  T
Q  223 cggaatccc 231  Q
    |||||||||    
T  53981758 cggaatccc 53981750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 4155432 - 4155368
Alignment:
Q  243 atcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| | ||||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  4155432 atcttggagagactctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 4155368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 48407803 - 48407753
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| ||||||||| |||||||||||  ||||||||||||||||||    
T  48407803 ttaaggtggaattaccaacccaccccctcacattcggggcgggatttccaa 48407753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 16926936 - 16926989
Alignment:
Q  254 actctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| ||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  16926936 actctgataccatcttagaaatcgtggttgagcttaacacaaccccacaaaacc 16926989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 54568001 - 54567936
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  54568001 gatcttggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 54567936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 1723064 - 1723116
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  1723064 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 1723116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 11589881 - 11589829
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  11589881 ctctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaacc 11589829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 47702407 - 47702450
Alignment:
Q  265 atgttagaaatcgtagttgagcctaacacaacaccacaaaacca 308  Q
    |||||||||||||| |||| |||||||||||| |||||||||||    
T  47702407 atgttagaaatcgtggttgggcctaacacaaccccacaaaacca 47702450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 21833444 - 21833403
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaac 296  Q
    |||||||| ||||||||||||||| |||| ||||||||||||    
T  21833444 ctctgataccatgttagaaatcgtggttgggcctaacacaac 21833403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 16239687 - 16239635
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||  ||||||||||    
T  16239687 ctctgataccatcttagaaatcgtggttgggcctaacacaatcccacaaaacc 16239635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 50095138 - 50095178
Alignment:
Q  117 aaatcacaattaaggtgggattaccaacacaccccctcacg 157  Q
    ||||| |||| |||| |||||||||||||||||||||||||    
T  50095138 aaatcgcaataaaggcgggattaccaacacaccccctcacg 50095178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 21497900 - 21498023
Alignment:
Q  129 aggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaat 228  Q
    |||||| ||||||||| ||||||||||   || |||| |||||||||| |||||||||||||||| | |||||||||||| |||||| | ||||||||||    
T  21497900 aggtggaattaccaacccaccccctcatattcagggcaggatttccaacacaccccctcacgctcgggcccaatgggcatgaagcgtggcaatgcggaat 21497999  T
Q  229 cccgacaacggtagatcttggata 252  Q
    ||||||||||||||||||||||||    
T  21498000 cccgacaacggtagatcttggata 21498023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 27048552 - 27048606
Alignment:
Q  119 atcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttc 173  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27048552 atcacaattaaggcgggattaccaacacaccccctcacgctcggggcgggatttc 27048606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 28085696 - 28085636
Alignment:
Q  116 caaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  28085696 caaatcgcaattaaggtgagattaccaacacaacccctcacgctcggagcgggatttccaa 28085636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 27048300 - 27048400
Alignment:
Q  166 gggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatca 265  Q
    |||||| |||| |||  |||||||||||||||||||||||||| ||| || | ||||||||||||    ||||||||||||||||||  |||||||| ||    
T  27048300 gggattaccaacacaaaccctcacgctcagacccaatgggcatgaagtgtggcaatgcggaatcc---taacggtagatcttggataggctctgatacca 27048396  T
Q  266 tgtt 269  Q
    ||||    
T  27048397 tgtt 27048400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 17111672 - 17111606
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacca 308  Q
    ||||||||| | ||||||||| ||| ||||||||||| |||| |||||||||||| |||||||||||    
T  17111672 gatcttggaaagactctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacca 17111606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 34206123 - 34206176
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcgg 162  Q
    |||||| || ||| |||| |||||||||||||||||||||||||||||||||||    
T  34206123 ctaggggcagatcgcaataaaggtgggattaccaacacaccccctcacgctcgg 34206176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 34206147 - 34206247
Alignment:
Q  166 gggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatca 265  Q
    |||||| |||| |||||||||||||||| ||||||| |||||| || | | | ||||||||||||   ||||| |||||||||||||  |||||||| ||    
T  34206147 gggattaccaacacaccccctcacgctcggacccaacgggcatgaaccctggcaatgcggaatcc---caacgatagatcttggataggctctgatacca 34206243  T
Q  266 tgtt 269  Q
    ||||    
T  34206244 tgtt 34206247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 34206395 - 34206452
Alignment:
Q  119 atcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||||| ||||||||||||||||||| || |||| |||||||||| ||||||||||    
T  34206395 atcacaataaaggtgggattaccaacaccccgcctcccgctcggggcaggatttccaa 34206452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 50543542 - 50543607
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||||||| ||||||||||| |||| |||||||||||| ||||||||||    
T  50543542 gatcttggagaggctctgatatcatcttagaaatcgtggttgggcctaacacaactccacaaaacc 50543607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 7193616 - 7193560
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacacc 182  Q
    ||||||||| ||||||||| |||||||||||  |||||||||||||||||| |||||    
T  7193616 ttaaggtggaattaccaacccaccccctcacattcggggcgggatttccaacacacc 7193560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 25052948 - 25052896
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||||||||||||||| |||| |||||||||||| ||||||||||    
T  25052948 ctctgataccatgttagaaatcgtggttgggcctaacacaaccccacaaaacc 25052896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 34358018 - 34358070
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||||||| |||||||||||  |||||||||||||||| ||||||||||    
T  34358018 ctctgatatcatcttagaaatcgtgtttgagcctaacacaaccccacaaaacc 34358070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 7193557 - 7193510
Alignment:
Q  129 aggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  7193557 aggtggaattaccaacccaccccctcacgttcggggcgggatttccaa 7193510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 41176652 - 41176602
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| ||||||||| |||||||||||  ||||||||||||||||||    
T  41176652 ttaaggtggaattaccaacccaccccctcacattcggggcgggatttccaa 41176602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 12869250 - 12869303
Alignment:
Q  254 actctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  12869250 actctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 12869303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 27048278 - 27048327
Alignment:
Q  111 agggccaaatcacaattaaggtgggattaccaacacaccccctcacgctc 160  Q
    |||| ||||| ||||||||||||||||||||||||||  |||||||||||    
T  27048278 aggggcaaattacaattaaggtgggattaccaacacaaaccctcacgctc 27048327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 11786959 - 11786999
Alignment:
Q  252 aaactctgatatcatgttagaaatcgtagttgagcctaaca 292  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  11786959 aaactctgatatcatgttagaaatcgtggttaagcctaaca 11786999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 11799126 - 11799166
Alignment:
Q  252 aaactctgatatcatgttagaaatcgtagttgagcctaaca 292  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  11799126 aaactctgatatcatgttagaaatcgtggttaagcctaaca 11799166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 14783175 - 14783227
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  14783175 ctctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaacc 14783227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 20545810 - 20545854
Alignment:
Q  116 caaatcacaattaaggtgggattaccaacacaccccctcacgctc 160  Q
    |||||| || ||||||| |||||||||||||||||||||||||||    
T  20545810 caaatcgcagttaaggtaggattaccaacacaccccctcacgctc 20545854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 22231296 - 22231348
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  22231296 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 22231348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 40717429 - 40717481
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  40717429 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 40717481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 50543318 - 50543370
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  50543318 ctctgataacatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 50543370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 12869030 - 12869069
Alignment:
Q  268 ttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  12869030 ttagaaatcgtagtttagcctaacacaaccccacaaaacc 12869069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 28245527 - 28245566
Alignment:
Q  268 ttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  28245527 ttagaaatcgtagttgggcctaacacaaccccacaaaacc 28245566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 21497841 - 21497891
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| ||||||||| |||||||||||  |||||| |||||||||||    
T  21497841 ttaaggtggaattaccaacccaccccctcacattcggggtgggatttccaa 21497891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 21498133 - 21498083
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| ||||||||| |||||||||||  |||||| |||||||||||    
T  21498133 ttaaggtggaattaccaacccaccccctcacattcggggtgggatttccaa 21498083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 38908063 - 38908013
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| ||||||||| |||||||||||  |||||| |||||||||||    
T  38908063 ttaaggtggaattaccaacccaccccctcacattcggggtgggatttccaa 38908013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 5846239 - 5846190
Alignment:
Q  258 tgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||| ||| ||||||||||| |||||||||||| |||| ||||||||||    
T  5846239 tgataccatattagaaatcgtggttgagcctaacgcaaccccacaaaacc 5846190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 6218313 - 6218248
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| | |||||||||| ||||||||||    
T  6218313 gatcttggagaggctctgataccatcttagaaatcgtggttgtgtctaacacaactccacaaaacc 6218248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 20545828 - 20545865
Alignment:
Q  167 ggatttccaatacaccccctcacgctcagacccaatgg 204  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  20545828 ggattaccaacacaccccctcacgctcagacccaatgg 20545865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 24513348 - 24513389
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaac 296  Q
    ||||||||||||||||||||||||  ||| ||||||||||||    
T  24513348 ctctgatatcatgttagaaatcgtgattgggcctaacacaac 24513389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 51564869 - 51564816
Alignment:
Q  123 caattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||||||||||| |||||||||||||||  || | || |||||||||||    
T  51564869 caattaaggtgggattagcaacacaccccctcattcttgaggggggatttccaa 51564816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 1518260 - 1518208
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||  |||||||||||| ||||||||||    
T  1518260 ctctgataccatcttagaaatcgtggttaggcctaacacaaccccacaaaacc 1518208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 9685494 - 9685442
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| ||||||||||||  |||||||||    
T  9685494 ctctgataccatattagaaatcgtggttgggcctaacacaacctcacaaaacc 9685442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 21498450 - 21498398
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||| ||| ||||||||||    
T  21498450 ctctgataccatattagaaatcgtggttgggcctaacataaccccacaaaacc 21498398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 35788755 - 35788703
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||| ||||||    
T  35788755 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccataaaacc 35788703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 53814917 - 53814969
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| || ||||||||| ||||||||||    
T  53814917 ctctgataccatattagaaatcgtggttgggcttaacacaaccccacaaaacc 53814969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 109 - 269
Target Start/End: Complemental strand, 12525103 - 12524947
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcat 208  Q
    |||||| |||||| |||||||||||||||||| | |||||||||| |||||||||||| |||||| || |||||||| |||||||||||||||||| |||    
T  12525103 ctaggggcaaatcgcaattaaggtgggattactagcacacccccttacgctcggggcgagatttctaacacaccccc-cacgctcagacccaatggacat 12525005  T
Q  209 caagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
     ||| || | ||||||||||||   ||||||||||||||| ||| ||| ||||| ||||||    
T  12525004 gaagtgtggcaatgcggaatcc---caacggtagatcttgtatagactatgataccatgtt 12524947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 13788746 - 13788861
Alignment:
Q  151 cctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggtagatcttgga 250  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||    |||||||||||||||||    
T  13788746 cctcatgctcggggcgggatttccaacacacaccctcacgctcagacccaatgggcatgaagcgtcgcaatgcggaatc---gcaacggtagatcttgga 13788842  T
Q  251 taaactctgatatcatgtt 269  Q
    ||  |||| ||| ||||||    
T  13788843 taggctctaataccatgtt 13788861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 12524788 - 12524649
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcgg 225  Q
    ||||||||||||||| | |||||||||| |||||||||| | |||||  || |||||||| ||||||||||||||||||| || |||||| | |||| ||    
T  12524788 ttaaggtgggattacaatcacacccccttacgctcggggtgagattttgaacacaccccc-cacgctcagacccaatgggaatgaagcgtggaaatgtgg 12524690  T
Q  226 aatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    |||||   |||||||||||| ||||||  |||||||| ||||||    
T  12524689 aatcc---caacggtagatcatggatagtctctgataccatgtt 12524649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 12524507 - 12524440
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| || |||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||    
T  12524507 ctaggggcatatcacaattaaggtgggattaccaacacacgccttcacactcggggcaggatttccaa 12524440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 14691046 - 14690979
Alignment:
Q  109 ctagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| || ||| |||||||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  14691046 ctaggggcagatcgcaattaaggtaggattaccaacacaccccctcatgctcggggagggatttccaa 14690979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 6782957 - 6782905
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  6782957 ctctgataccatgttagaaatcgtggttgagcctaacacaaccccacaaaacc 6782905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 12518315 - 12518387
Alignment:
Q  110 tagggccaaatcacaattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacacc 182  Q
    ||||| || ||| |||||||||||| ||||||||| ||||||||| || |||||| ||||||||||| |||||    
T  12518315 taggggcagatcgcaattaaggtggaattaccaacccaccccctctcgttcggggtgggatttccaacacacc 12518387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 43288473 - 43288394
Alignment:
Q  169 atttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggtagatcttggat 251  Q
    |||||||| |||| |||||| |||| |||||||||||||| |||||  | ||||||||||||   ||||||||||||||||||    
T  43288473 atttccaacacacaccctcatgctcggacccaatgggcatgaagcgcagcaatgcggaatcc---caacggtagatcttggat 43288394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 12578618 - 12578677
Alignment:
Q  123 caattaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacacc 182  Q
    |||||||||||| ||||||||| |||||||||  | |||||||||||||||||| |||||    
T  12578618 caattaaggtggaattaccaacccaccccctctagttcggggcgggatttccaacacacc 12578677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 40121897 - 40121964
Alignment:
Q  240 tagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||| |||||  |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  40121897 tagatctaggataggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 40121964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 33996299 - 33996368
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaacagcttgtgaggtgaaga 327  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| |||||||||| |   |||||||||||||||    
T  33996299 ctctgataccatcttagaaatcgtggttgggcctaacacaactccacaaaaccga---cttgtgaggtgaaga 33996368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 10903194 - 10903129
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| || |||||||||||| |||| |||||| |||| | |||||||||| ||||||||||    
T  10903194 gatcttggagaagctctgatatcattttagtaatcgtggttggggctaacacaactccacaaaacc 10903129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 25620245 - 25620180
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  25620245 gatcttggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 25620180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 29469714 - 29469649
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  29469714 gatcttggagaggctctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaacc 29469649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 31257255 - 31257307
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  31257255 ctctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaacc 31257307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 48116456 - 48116488
Alignment:
Q  144 cacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||||||||||||||||||||||||||||||    
T  48116456 cacaccccctcacgctcggggcgggatttccaa 48116488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 26562060 - 26562130
Alignment:
Q  254 actctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaacagcttgtgaggtgaaga 327  Q
    ||||||||| ||| |||||||| || ||||||||||||| ||| |||||||||   | ||||||||||||||||    
T  26562060 actctgataccatattagaaatggtggttgagcctaacataaccccacaaaac---cggcttgtgaggtgaaga 26562130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 43085538 - 43085580
Alignment:
Q  268 ttagaaatcgtagttgagcctaacacaacaccacaaaaccaac 310  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||    
T  43085538 ttagaaatcgtggttgagcttaacacaaccccacaaaaccaac 43085580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 3038072 - 3038124
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| || ||||||||| | |||| |||||||||||| ||||||||||    
T  3038072 ctctgatattatcttagaaatcatggttgggcctaacacaaccccacaaaacc 3038124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 10882227 - 10882275
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaa 303  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||    
T  10882227 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaa 10882275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 17202275 - 17202223
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||| ||||||| |||| |||||||||||| ||||||||||    
T  17202275 ctctgataccatattaaaaatcgtggttgggcctaacacaaccccacaaaacc 17202223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 30296546 - 30296506
Alignment:
Q  119 atcacaattaaggtgggattaccaacacaccccctcacgct 159  Q
    ||||||||||||| || ||| ||||||||||||||||||||    
T  30296546 atcacaattaaggcggaatttccaacacaccccctcacgct 30296506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 34027489 - 34027437
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||| ||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  34027489 ctctaataccatattagaaatcgtggttgggcctaacacaaccccacaaaacc 34027437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 18779679 - 18779573
Alignment:
Q  141 caacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggt 240  Q
    ||||||||||||||| |||||||||||||||||||  |||| | ||||||||||| ||||||| |||| |||||| | || ||| |||||||||||||||    
T  18779679 caacacaccccctcatgctcggggcgggatttccac-acactctctcacgctcagccccaatgagcatgaagcgtggcaacgcgaaatcccgacaacggt 18779581  T
Q  241 agatcttg 248  Q
    ||||||||    
T  18779580 agatcttg 18779573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 1469229 - 1469155
Alignment:
Q  126 ttaaggtgggattaccaacacaccccctcacgctcggggcgggatttccaatacaccccctcacgctcagaccca 200  Q
    ||||||||| ||||||||| |||||||||||  || ||||||||||||||| |||||||||||||||||| ||||    
T  1469229 ttaaggtggaattaccaacccaccccctcacattcagggcgggatttccaacacaccccctcacgctcaggccca 1469155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 7638821 - 7638905
Alignment:
Q  240 tagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaacagcttgtgaggtgaaga 327  Q
    ||||||||||| || |||||||||| | ||||||||| ||||||  |||||||||||  ||||||||   ||||||||||||||||||    
T  7638821 tagatcttggagaagctctgatatcttcttagaaatcatagttggacctaacacaaccgcacaaaac---cagcttgtgaggtgaaga 7638905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 4868801 - 4868853
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  4868801 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 4868853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 8026485 - 8026433
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  8026485 ctctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaacc 8026433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 10145737 - 10145789
Alignment:
Q  254 actctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaac 306  Q
    ||||||||||||| |||||||| || ||||||||||||||||| | |||||||    
T  10145737 actctgatatcatcttagaaattgtggttgagcctaacacaaccctacaaaac 10145789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 30256908 - 30256856
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  30256908 ctctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaacc 30256856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 5557276 - 5557194
Alignment:
Q  184 cctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgtt 269  Q
    ||||||||||||||||||||||| | |||||| | | ||||||||||   ||||||| ||||||| ||||  ||| ||||||||||    
T  5557276 cctcacgctcagacccaatgggcttgaagcgtggcattgcggaatcc---caacggtggatcttgaataagttctaatatcatgtt 5557194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 21690815 - 21690768
Alignment:
Q  258 tgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaa 305  Q
    ||||| ||| ||||||||||| ||||||||||||||||| ||||||||    
T  21690815 tgataccatattagaaatcgtggttgagcctaacacaaccccacaaaa 21690768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 24554214 - 24554144
Alignment:
Q  254 actctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaacagcttgtgaggtgaaga 327  Q
    ||||||||| ||||||||||||  | |||||| |||||||||| |||||||||   | ||||||||||||||||    
T  24554214 actctgataccatgttagaaattatggttgagactaacacaactccacaaaac---cggcttgtgaggtgaaga 24554144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 25065095 - 25065134
Alignment:
Q  268 ttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  25065095 ttagaaatcgtagttgggcctaacacaaccccacaaaacc 25065134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 12330154 - 12330219
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| ||||||||||||  |||||||||    
T  12330154 gatcttggagaggctctgataccatattagaaatcgtggttgggcctaacacaacctcacaaaacc 12330219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 13353310 - 13353245
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| |||||||| || |||| |||||||||||| ||||||||||    
T  13353310 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaacc 13353245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 33796435 - 33796370
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| |||||||| || |||| |||||||||||| ||||||||||    
T  33796435 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaacc 33796370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 9705116 - 9705064
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| |||||||| || |||| |||||||||||| ||||||||||    
T  9705116 ctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaacc 9705064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 13740777 - 13740725
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||| |||| || ||||||||||| |||||||||||||||||  |||||||||    
T  13740777 ctctaatataatattagaaatcgtggttgagcctaacacaacctcacaaaacc 13740725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 13746277 - 13746225
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||| |||| || ||||||||||| |||||||||||||||||  |||||||||    
T  13746277 ctctaatataatattagaaatcgtggttgagcctaacacaacctcacaaaacc 13746225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 27653313 - 27653261
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||  ||||||||||    
T  27653313 ctctgataccatattagaaatcgtggttgggcctaacacaatcccacaaaacc 27653261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 30256674 - 30256622
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||  ||||||||||| |||| |||||||||||| ||||||||||    
T  30256674 ctctgataccaccttagaaatcgtggttgggcctaacacaaccccacaaaacc 30256622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 4465080 - 4465177
Alignment:
Q  169 atttccaatacaccccctcacgctcagacccaatgggcatcaagcgtcgtaatgcggaatcccgacaacggtagatcttggataaactctgatatcatgt 268  Q
    ||||||||  ||||||||||||||| |||||||||||||  |||||| |  |||||||||||   |||||||| |||||||||| ||||||||| |||||    
T  4465080 atttccaacgcaccccctcacgctcggacccaatgggcacgaagcgtggcgatgcggaatcc---caacggtaaatcttggatagactctgataccatgt 4465176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 1564555 - 1564606
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaac 306  Q
    |||||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  1564555 ctctgatatcatcttagaaatcgtggttgagcctaacacaaccccacaaaac 1564606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 1028365 - 1028435
Alignment:
Q  234 caacggtagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaa 304  Q
    ||||| ||||||| |||||  |||||||| |||||||||||| || |||| |||||||||||| |||||||    
T  1028365 caacgatagatctaggataggctctgataccatgttagaaatggtggttgggcctaacacaaccccacaaa 1028435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 14029047 - 14029002
Alignment:
Q  131 gtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||||    
T  14029047 gtgggattatcaacacactccctcacgctcggggcaggatttccaa 14029002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 25258276 - 25258341
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| || |||||||| ||| ||||||||||| ||||||  ||||||||| ||||||||||    
T  25258276 gatcttggagaagctctgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaacc 25258341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 25322066 - 25322131
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| || |||||||| ||| ||||||||||| ||||||  ||||||||| ||||||||||    
T  25322066 gatcttggagaagctctgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaacc 25322131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 2063722 - 2063774
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  2063722 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 2063774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 17016385 - 17016429
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacacc 299  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||    
T  17016385 ctctgataccatgttagaaatcgtggttgggcctaacacaacacc 17016429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 41666981 - 41667033
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  41666981 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 41667033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 12965400 - 12965447
Alignment:
Q  129 aggtgggattaccaacacaccccctcacgctcggggcgggatttccaa 176  Q
    |||||| ||||||||||| |||||||| |||| |||||||||||||||    
T  12965400 aggtggaattaccaacaccccccctcatgctcagggcgggatttccaa 12965447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 15480418 - 15480352
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaacagcttgtgaggtga 324  Q
    |||||||| ||| ||||||||||| |||| |||||||| ||| |||||||||   |||||||||||||||    
T  15480418 ctctgataccatcttagaaatcgtggttgggcctaacagaaccccacaaaac---cagcttgtgaggtga 15480352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 20225134 - 20225087
Alignment:
Q  258 tgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaa 305  Q
    ||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  20225134 tgatatcattttagaaatcgtggttgaacctaacacaaccccacaaaa 20225087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 13843928 - 13843890
Alignment:
Q  121 cacaattaaggtgggattaccaacacaccccctcacgct 159  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  13843928 cacaattaaggtggaatttccaacacaccccctcacgct 13843890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 1564497 - 1564538
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaac 296  Q
    |||||||||||| ||||||||||| |||||||| ||||||||    
T  1564497 ctctgatatcatcttagaaatcgtggttgagccaaacacaac 1564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 13701055 - 13701108
Alignment:
Q  254 actctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||||||| ||||||||||| |||  ||||||||| || ||||||||||    
T  13701055 actctgatatcatcttagaaatcgtggttaggcctaacacgaccccacaaaacc 13701108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 17150456 - 17150497
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaac 296  Q
    |||||||| ||| ||| |||||||||||||||||||||||||    
T  17150456 ctctgataccatcttaaaaatcgtagttgagcctaacacaac 17150497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 2986003 - 2986055
Alignment:
Q  258 tgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaaccaac 310  Q
    ||||| ||| |||||||| || ||||||||||||||||| ||||||| |||||    
T  2986003 tgataccatcttagaaatggtggttgagcctaacacaaccccacaaatccaac 2986055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 7133981 - 7134048
Alignment:
Q  238 ggtagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaac 306  Q
    ||||||||||||| |  |||||||||||| |||||||| || |||| ||||| |||||| |||||||||    
T  7133981 ggtagatcttggagaggctctgatatcatattagaaattgtggttg-gcctagcacaaccccacaaaac 7134048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 8081101 - 8081153
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||| | |||| |||||||||||| ||||||||||    
T  8081101 ctctgataccatcttagaaatcatggttgggcctaacacaaccccacaaaacc 8081153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 8098413 - 8098361
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| || ||||||||| ||||||||||    
T  8098413 ctctgataccatattagaaatcgtggttgggcttaacacaaccccacaaaacc 8098361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 18333687 - 18333739
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| |||||| |||| |||| |||||||||||| ||||||||||    
T  18333687 ctctgataccatcttagaattcgtggttgggcctaacacaaccccacaaaacc 18333739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 24528636 - 24528584
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||| | |||| |||||||||||| ||||||||||    
T  24528636 ctctgataccatcttagaaatcatggttgggcctaacacaaccccacaaaacc 24528584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 29909709 - 29909761
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||| |||| |||||||| || |||| |||||||||||| ||||||||||    
T  29909709 ctctgatgtcatattagaaatggtggttgggcctaacacaactccacaaaacc 29909761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 43117758 - 43117694
Alignment:
Q  240 tagatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaa 304  Q
    ||||||||||| |  ||||||||  || ||||||||||| |||| |||||||||||| |||||||    
T  43117758 tagatcttggaaaggctctgatactatcttagaaatcgttgttgggcctaacacaaccccacaaa 43117694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 41194 - 41244
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaa 305  Q
    |||||||| ||| ||||||||||||||||||||||| ||||| ||||||||    
T  41194 ctctgataccatcttagaaatcgtagttgagcctaatacaaccccacaaaa 41244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 81951 - 81886
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  81951 gatcttggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 81886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 56555 - 56503
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  56555 ctctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaacc 56503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 5729 - 5794
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||||||| |||| |||||||||||| || |||||||    
T  5729 gatcttggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccgcaaaacc 5794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 2025 - 1960
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| |||||||| || |||| |||||||||||| ||||||||||    
T  2025 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaacc 1960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 14412 - 14347
Alignment:
Q  242 gatcttggataaactctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    ||||||||| |  |||||||| ||| ||||||| ||| |||| |||||||||||| ||||||||||    
T  14412 gatcttggagaggctctgataccatcttagaaaacgtggttgggcctaacacaaccccacaaaacc 14347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 5751 - 5699
Alignment:
Q  255 ctctgatatcatgttagaaatcgtagttgagcctaacacaacaccacaaaacc 307  Q
    |||||||| ||| ||||||||||| |||| | |||||||||| ||||||||||    
T  5751 ctctgataccatcttagaaatcgtggttgggtctaacacaaccccacaaaacc 5699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5326 times since January 2019
Visitors: 5756