View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_26 (Length: 539)
Name: NF0809_high_26
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 38944135 - 38943753
Alignment:
| Q |
11 |
cacagaccaagtttaaccaaatcaatgctaatgtggacgctaagcaattaaaaacttaaatacacgactagacgccatgtgtgaagaagggaatttggat |
110 |
Q |
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| T |
38944135 |
cacagactaagtttaaccgaatcaatgttgatgtagacgctaagcaattaaaaacttaagtacacgactagacgccatgtgtgaagaagggaatttggat |
38944036 |
T |
|
| Q |
111 |
gagacagaaaattttggaacatagatagaatacgtgggcgtggccacacaagggcctcatttaatttttaaaaagttttgagagagaagaaccacatgtt |
210 |
Q |
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| T |
38944035 |
gagacggaaaattttggaacatagatagaatacgtgggcgtggccacacaagggcctcatttaatttttaaaaagttttgagagagaagaaccacatgtt |
38943936 |
T |
|
| Q |
211 |
aataaattttcaaatgtcgaaatttacatatatgtttaatgtctagggggtcattgatgttactgctataagggtgcaatgcttctattgaagttgccac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38943935 |
aataaattttcaaatgtcgaaatttacatatatgtttaatgtctagggggtcattgatgttactgctataagggtgcaatgcttctattgaagttgccac |
38943836 |
T |
|
| Q |
311 |
ctgatagttatttttcatgcgtaatgtagttgtgtggcagcaactatttggtggaggaatcattgaaggaaaaccattaaatt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38943835 |
ctgatagttatttttcatgcgtaatgtagttgtgtggcagcaactatttggtggaggaatcattgaaggaaaacccttaaatt |
38943753 |
T |
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