View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_32 (Length: 503)
Name: NF0809_high_32
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 155 - 493
Target Start/End: Original strand, 5832782 - 5833120
Alignment:
| Q |
155 |
tgatagtgtaagattaaaaatgaacaatattcttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctgg |
254 |
Q |
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| T |
5832782 |
tgatagtgtaagattaaaaatgaacaatattcttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctgg |
5832881 |
T |
|
| Q |
255 |
tgagcaaagcttgccagtgaattgtggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtc |
354 |
Q |
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| T |
5832882 |
tgagcaaagtttgccggtgaattgtggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtc |
5832981 |
T |
|
| Q |
355 |
tctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttcaccattaacacctttctgagtctccaataaacatctct |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
5832982 |
tctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttcaccattgacacctttctgagtctccaacaaacatctct |
5833081 |
T |
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| Q |
455 |
tccctgatgaagctactgagaaactacacacttcctttg |
493 |
Q |
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| T |
5833082 |
tccctgatgaagctactgagaaagtacacacttcctttg |
5833120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 185 - 493
Target Start/End: Complemental strand, 5828943 - 5828635
Alignment:
| Q |
185 |
tcttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagcttgccagtgaattgtggctc |
284 |
Q |
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| T |
5828943 |
tcttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctc |
5828844 |
T |
|
| Q |
285 |
aaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactata |
384 |
Q |
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| T |
5828843 |
aaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtatgctgctattctctccaccata |
5828744 |
T |
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| Q |
385 |
acttcagatgttctacattgatactcaatttcaccattaacacctttctgagtctccaataaacatctcttccctgatgaagctactgagaaactacaca |
484 |
Q |
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| T |
5828743 |
acttcagatgttcggcattgatactcggtttcaccattgatattcttctcagtctccaacaaacatctctttcctgatgaagctactgagaaagcacaca |
5828644 |
T |
|
| Q |
485 |
cttcctttg |
493 |
Q |
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||||||||| |
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| T |
5828643 |
cttcctttg |
5828635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 187 - 493
Target Start/End: Original strand, 5822936 - 5823242
Alignment:
| Q |
187 |
ttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagcttgccagtgaattgtggctcaa |
286 |
Q |
| |
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||||| ||||||||||||| ||| ||||||||||||||||| || || ||||| | |||||| ||| || |||||||||| ||||| | ||||||| |
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| T |
5822936 |
ttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
5823035 |
T |
|
| Q |
287 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataac |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||| ||||| |
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| T |
5823036 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttctacacattcgtctgtctctatgtatgctgctattctctccaccataac |
5823135 |
T |
|
| Q |
387 |
ttcagatgttctacattgatactcaatttcaccattaacacctttctgagtctccaataaacatctcttccctgatgaagctactgagaaactacacact |
486 |
Q |
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||||||||||| ||||||||||| |||||||||| | | |||| ||||||||| ||||||||||| || |||||||||||||||||| ||||||| |
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| T |
5823136 |
ttcagatgttcggcattgatactcggtttcaccattgatattcttctcagtctccaacaaacatctctttccagatgaagctactgagaaagcacacact |
5823235 |
T |
|
| Q |
487 |
tcctttg |
493 |
Q |
| |
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||||||| |
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| T |
5823236 |
tcctttg |
5823242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 172 - 362
Target Start/End: Original strand, 24038420 - 24038609
Alignment:
| Q |
172 |
aaatgaacaatattcttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagcttgccag |
271 |
Q |
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||||||| ||||| |||||| || |||||||||| ||||||| ||||||||||||| || ||||| |||| |||||||| || ||| ||||| ||| | | |
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| T |
24038420 |
aaatgaaaaatat-cttaccttccccagcagccaaattgaagtaaaggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctg |
24038518 |
T |
|
| Q |
272 |
tgaattgtggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgta |
362 |
Q |
| |
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||||||||||||||| || ||||| || ||||| || ||| || | || ||||| |||||||||| |||||||||||||||||||||||| |
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| T |
24038519 |
tgaattgtggctcaagcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacacattgatctgtctctatgta |
24038609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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