View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_high_37 (Length: 487)
Name: NF0809_high_37
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 36397663 - 36397190
Alignment:
| Q |
1 |
caagtatgattgatgccagtgtaatcacggtaccaatattattgcaacggcagtgttatacatcaggagacttttcatagtgaattgcattatgaattaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36397663 |
caagtatggttgatgccagtgtaatcacggtaccaatattattgcaacggcagtgttatacagcaggagagttttcatagtgaattgcattatgaattaa |
36397564 |
T |
|
| Q |
101 |
tcgttgttgaccaatacactcacgctcttattgaaaaacaccgtggttatgggatataattgtgatcaaactttcaccatgtaacgataaaaagcctacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36397563 |
tcgttgttgaccaatacactcacgctcttattgaaaaacaccgtggttatgggatgtaattgtgatcaaactttcaccatgtaacgataaaaagcctacg |
36397464 |
T |
|
| Q |
201 |
tgatcacgtagtgaattttgttttcgttatcttaaacattaccattgttgtataaaccccaaaaatatcttga--ctgtgattgcaattgattgcggaca |
298 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36397463 |
tgatcacgtcgtgaattttgttttcgttatcttaaacattaccattgttgtataaaccccaaaaatatcttgactctgtgattgcaattgattgcggaca |
36397364 |
T |
|
| Q |
299 |
tcaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaattataaacactaaacagacaatctggattgtgtag |
398 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36397363 |
tgaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaattataaacactaaacagacaatttggattgtgtag |
36397264 |
T |
|
| Q |
399 |
tgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttctgatat |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36397263 |
tgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttctgatat |
36397190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4833 times since January 2019
Visitors: 5752