View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_39 (Length: 478)
Name: NF0809_high_39
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 113 - 404
Target Start/End: Complemental strand, 27815043 - 27814743
Alignment:
| Q |
113 |
ggctttgttcttcatgaatgaaattaaatggtggctagtgacggnnnnnnnnttgattgtgaaacatggttagccaccatttgagcta-----------a |
201 |
Q |
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| T |
27815043 |
ggctttgttcttcatgaatgaaattaaatggtggctagagatggaaaaaaaattgattgtgaaacatggttagccaccatttgagctagagatggaataa |
27814944 |
T |
|
| Q |
202 |
catggttcagtaaaacaaaatcaatnnnnnnncacaacatttcaataaagtggcgagagatggaatttggcttcgaaaggtcaacttcgtagctttccaa |
301 |
Q |
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| T |
27814943 |
catggttcagtaaaacaaaatcaataaaaag-cacaacatttcagtaaagtggcgagagatg-aatttggcttcgaaaggtcaacttcttagctttccaa |
27814846 |
T |
|
| Q |
302 |
caataaagctggtgtgacacacaaagcaatttggcttggacagagtttgttagccaccatttgaatgnnnnnnnnttccaggaagatgcatgttcttcat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| | |
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| T |
27814845 |
caataaagctggtgtgacacacaaagcaatttggcttctacagagtttgttagccaacatttgaatggaaaaaaattccaggaagatgcatgttcttctt |
27814746 |
T |
|
| Q |
402 |
ctc |
404 |
Q |
| |
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||| |
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| T |
27814745 |
ctc |
27814743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 35916575 - 35916472
Alignment:
| Q |
7 |
cctccttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916575 |
cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac |
35916476 |
T |
|
| Q |
107 |
agct |
110 |
Q |
| |
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|||| |
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| T |
35916475 |
agct |
35916472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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