View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_4 (Length: 755)
Name: NF0809_high_4
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 645; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 11 - 726
Target Start/End: Original strand, 3307214 - 3307929
Alignment:
| Q |
11 |
caaaggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccgtt |
110 |
Q |
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| T |
3307214 |
caaaggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccgtt |
3307313 |
T |
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| Q |
111 |
caagatgagattacctcggaggaggattatgagagtgcgggtagtggtggtgacaagttgggaaaccaaaaatgagttaggtcatggtatgtagatgctc |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3307314 |
caagatgagattgcctcggaggaggattatgagagtgtgggtagtggtggtgacaagttgggaaaccaaaaatgagttaggtcatggtatgtagatgctc |
3307413 |
T |
|
| Q |
211 |
ttatcacatgtgtccaagnnnnnnnnntgagactttggagttgaaagaaggtggactcgttcacttagaaataacacaaagtgcaaggttcaagttatga |
310 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3307414 |
ttatcacatgtgtccaggaaaaaaaatagagactttggagttgaaagaaggtggactcgttcacttagaaataacacagagtgcaaggttcaagttatga |
3307513 |
T |
|
| Q |
311 |
gttcaatttgtcttaggatttttgacaaccttaaattcctattacaaattggcataggtgaatgcatgaatggatcattttgaaccatattagatgcaaa |
410 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3307514 |
gtttaatttgtcttaggatttttgacaaccttaaattcctattacaaattggcataggtgaatgaatgaatggatcattttgaaccatattagatgcaaa |
3307613 |
T |
|
| Q |
411 |
tttttggagttgggttgcccaagagtttttagaagagaagctgtgagtactacaacatgatcaagatatgtccgtcaatatgaataaatttcaagacacc |
510 |
Q |
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| T |
3307614 |
tttttggagctgggttgcccaagagtttttagaagagaagctgtgagtactacaacatgatcaagatatgtccgtcaatatgaataaatttcaagacacc |
3307713 |
T |
|
| Q |
511 |
tgtggaggtttgaagttagagctctcgattgtgtcttcattggttatcctgaaggcataagggttacaagttattcaattgagtatggaacctggaggct |
610 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3307714 |
tatggaggtttgaagttagagctctcgattgtgtcttcattggttatccagaaggcataagggttacaagttattgaattgagtatggaacctggaggct |
3307813 |
T |
|
| Q |
611 |
taagggtcatgatgagcaatgatgttacttttgatgagacttgtatgaggatgaagtacaaagacttgtatgtgtttgaggatgagtttcccactagtaa |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3307814 |
taagggtcatgatgagcaatgatgttacttttgatgagacttgtatgaggatgaagtacaaagacttgtatgtgtttgaggatgagtttcccactagtaa |
3307913 |
T |
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| Q |
711 |
gaccaggtatggaaat |
726 |
Q |
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|||||||||||||||| |
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| T |
3307914 |
gaccaggtatggaaat |
3307929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 16549593 - 16549635
Alignment:
| Q |
31 |
aagtataaatgcttcaattgtcacaagaccaataacttcaaga |
73 |
Q |
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| T |
16549593 |
aagtacaaatgcttcaattgtcacaagaccaatcacttcaaga |
16549635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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