View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_46 (Length: 447)
Name: NF0809_high_46
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 76 - 443
Target Start/End: Complemental strand, 35916575 - 35916212
Alignment:
| Q |
76 |
cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac |
175 |
Q |
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| T |
35916575 |
cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac |
35916476 |
T |
|
| Q |
176 |
agcttgagcccaatgtcttaacttggtcttcaccaattcaggatcatcccctacattgcacaaagatgcaaacccgcaacctcgtcagcaaaactataca |
275 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916475 |
agcttgagcccaatgtcttaatttggtcttcaccaattcaggatcatcccctacattgcacaaagatgcaaacccgcaacctcgtcagcaaaactataca |
35916376 |
T |
|
| Q |
276 |
tgcatttaatctattaatttgtataattttttgccaataatgtataagacaaacacattgagatgttaaaaaataggnnnnnnnnnnnnntatcggtaag |
375 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35916375 |
tgcatttaatatattaatttgtataattttttgccaataatgtataagacaaacacattgagatgttaaaaaatagg----tatatatattatcggtaag |
35916280 |
T |
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| Q |
376 |
aactcctgaccgaattctgaattatcgcagtcttattcccgtgagaaccaaaagattaaggcaaaaaa |
443 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35916279 |
aactcctgaccgaattctgaattatcgcagtcttattcccgtgagaaccaaaggattaaggcaaaaaa |
35916212 |
T |
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