View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_50 (Length: 437)
Name: NF0809_high_50
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_50 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 20479390 - 20478990
Alignment:
| Q |
9 |
agcagagaggatgaagatggtgttggtaggaagttttcaagaagcattcaagnnnnnnnngaatggaaagaagggtcaagaacgaaagcggaatcaattt |
108 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20479390 |
agcacagaggatgaagatggtgtttgtaggaagttttcaagaagcattcaagaaaaaaaagaatggaaagaagggtcaagaacgaaagcggaatcaattt |
20479291 |
T |
|
| Q |
109 |
gaattcggcattcgattgttgtcactgatagtttcatacctttattttcatcttttcaagaggaagaaggaggttagctttgaggagtttaggaataagc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20479290 |
gaattcggcattcgattgttgtcactgatagtttcatacctttattttcatcttttcaagaggaagaaggaggttagctttgaggagtttaggaataagc |
20479191 |
T |
|
| Q |
209 |
ttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatatatgtcaggaggaacaacggtgcttcaaaagcaagatatga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20479190 |
ttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatatatgtcaggaggaacaacggtgcttcaaaagcaagatatga |
20479091 |
T |
|
| Q |
309 |
atattatttgaatattggaagtgttgattcttttgagaggaagttagagaaagcacaagaaggactaggcattcaacatcatgattttgtacgtgttacg |
408 |
Q |
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| T |
20479090 |
atattttttcaatattggaagtgttgattcttttgagaggaagttagagaaagcacaagaaggactaggcattcaacatcatgattttgtacgtgttacg |
20478991 |
T |
|
| Q |
409 |
t |
409 |
Q |
| |
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| |
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| T |
20478990 |
t |
20478990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 298 - 407
Target Start/End: Original strand, 29727704 - 29727813
Alignment:
| Q |
298 |
gcaagatatgaatattatttgaatattggaagtgttgattcttttgagaggaagttagagaaagcacaagaaggactaggcattcaacatcatgattttg |
397 |
Q |
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|||| |||| |||||||| | || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
29727704 |
gcaaaatataaatattatgttaagattggaagtgtggattcttttgagaggaagttagagaaagcacaagaaggactaggcattgatcatcatgattttg |
29727803 |
T |
|
| Q |
398 |
tacgtgttac |
407 |
Q |
| |
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|||||||||| |
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| T |
29727804 |
tacgtgttac |
29727813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 29727565 - 29727668
Alignment:
| Q |
171 |
gaagaaggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatatat |
270 |
Q |
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| T |
29727565 |
gaagcaggagattagctttcaggagtttaagattaaggttttggaacctggcttagtagaccatattgttgtctccaacaaagaatttgccaaaatatat |
29727664 |
T |
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| Q |
271 |
gtca |
274 |
Q |
| |
|
|||| |
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|
| T |
29727665 |
gtca |
29727668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 38515005 - 38514942
Alignment:
| Q |
182 |
ttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctc |
245 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||| || || |||||||||||||| |
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| T |
38515005 |
ttagctttcaggagtttgtgaataagcttttggaaccaggattggtagatcatattgttgtctc |
38514942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 407
Target Start/End: Original strand, 16837143 - 16837361
Alignment:
| Q |
176 |
aggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatatatgtcag |
275 |
Q |
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| T |
16837143 |
aggagattagctttcaggagtttaagattaaggttttggaacctggcttagtagaccatattgttgtctctaacaaagaacttgccaaaatatatgtcaa |
16837242 |
T |
|
| Q |
276 |
gaggaacaacggtgcttcaaaagcaagatatgaatattatttgaatattggaagtgttgattcttttgagaggaagttagagaaagcacaagaaggacta |
375 |
Q |
| |
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|| || | ||| | ||||| |||| |||||||||| || ||||||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
16837243 |
gaataatgaaagtg---aagtagcaaaatataaatattattttaagattggaagtgtggattcttttgagagg----------aagctcaagaaggacta |
16837329 |
T |
|
| Q |
376 |
ggcattcaacatcatgattttgtacgtgttac |
407 |
Q |
| |
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|||||| | ||||||||||||||||||||||| |
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| T |
16837330 |
ggcattgatcatcatgattttgtacgtgttac |
16837361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 24003047 - 24003133
Alignment:
| Q |
191 |
aggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatatatgtcagga |
277 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| |||| |
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| T |
24003047 |
aggagtttaaaaataagcttttggaaccaggattagtagaccatattgttgtctccaacaaatcagttgccaaaatatatgtgagga |
24003133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 24003217 - 24003276
Alignment:
| Q |
319 |
aatattggaagtgttgattcttttgagaggaagttagagaaagcacaagaaggactaggc |
378 |
Q |
| |
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|||||||||||||| || ||||||||| |||||||||| |||| ||||||| ||||||| |
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| T |
24003217 |
aatattggaagtgtcgagtcttttgaggagaagttagaggaagcgcaagaagcactaggc |
24003276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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