View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_52 (Length: 427)
Name: NF0809_high_52
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 298 - 419
Target Start/End: Complemental strand, 3921581 - 3921460
Alignment:
| Q |
298 |
cttaatcccaacaatagagaaaattagctaattaagtatattagccttataatacatatcaagaagagatggaatgataatggatgttgatccctgaagt |
397 |
Q |
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| T |
3921581 |
cttaatcccaacgatagagaaaattagctaattaagcatattagccttataatacatatcaagaagagatggaatgataattgatgttgatccctgaagt |
3921482 |
T |
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| Q |
398 |
ttcttcaaacttgtttcatctc |
419 |
Q |
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| T |
3921481 |
ttcttcaaacttgtttcttctc |
3921460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 3922176 - 3922066
Alignment:
| Q |
28 |
caattaatcaatataatagcacgaaattctgacaatgggttatgaatgtaattctagccctatgctaacaactattatctacgaacgaacttatttcaat |
127 |
Q |
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| T |
3922176 |
caattaatcaatataatagcacgaaattctgacaatgtgttatgaatgtaattctagccctatggtaacaactattatctacgaacgaacttatttcaat |
3922077 |
T |
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| Q |
128 |
tcccttatgtt |
138 |
Q |
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| T |
3922076 |
tcccttatgtt |
3922066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 36943944 - 36943886
Alignment:
| Q |
343 |
cttataatacatatcaagaagagatggaatgataatggatgttgatccctgaagtttct |
401 |
Q |
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| T |
36943944 |
cttatgatacataacaataagagatgaaatgataattgatgttgatccctcaagtttct |
36943886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 36944071 - 36944015
Alignment:
| Q |
212 |
tgaaaataaattcatcgataaaacaaaacaaagattgtatacaaccagccatatcaa |
268 |
Q |
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| T |
36944071 |
tgaaaataaattcatcgatataacaaaacaaagatagtgtattaccaaccatatcaa |
36944015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 36960391 - 36960454
Alignment:
| Q |
204 |
attaagtatgaaaataaattcatcgataaaacaaaacaaagattgtatacaaccagccatatcaa |
268 |
Q |
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||||||| ||||||||||||||||||| | ||||||||||||| || || |||| ||||||||| |
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| T |
36960391 |
attaagtgtgaaaataaattcatcgat-atacaaaacaaagatagtgtattaccaaccatatcaa |
36960454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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