View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_55 (Length: 420)
Name: NF0809_high_55
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 108 - 392
Target Start/End: Original strand, 34825517 - 34825818
Alignment:
| Q |
108 |
tatttgaaattgcttatgttagaattcagttgtcatttaagcttgcatgtcaagcaacaatagtactaatcatatttgcagcacacatgctattcctaag |
207 |
Q |
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| T |
34825517 |
tatttgaaattgcttatgttagaattcagttgtcatttaagcttgcatgtcaagcaacaatagtactaatcatatttgcagcacacatgctattcctaag |
34825616 |
T |
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| Q |
208 |
atatcaataatgcctaaaagaaatacacat-----------------agtagatgtgagtgtgaccaaaacattatcaagcatgatcaatgattgagcct |
290 |
Q |
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| T |
34825617 |
atatcaataatgcctaaaagaaatacacatcatgatgtttgcaacatagtagatgtgagtgtgaccaaaacattatcaaccatgatcaatgattgagcct |
34825716 |
T |
|
| Q |
291 |
agaaaaagtgcatacccaatttgtaaagttggctcacactccaactgttgatagagaccatcaccctgagtttgacttggatgccgaccatagcccattt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825717 |
agaaaaagtgcatacccaatttgtaaagttggctcacactccaactgttgatagagaccatcaccctgagtttgacttggatgccgaccatagcccattt |
34825816 |
T |
|
| Q |
391 |
ct |
392 |
Q |
| |
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|| |
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| T |
34825817 |
ct |
34825818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 34825171 - 34825275
Alignment:
| Q |
8 |
ccaagaaaataataatatagatttaatttgtatacaccgattgtatgattgttttttacacatgcatcaggtcagatcacaccacatgtttttgtggaga |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825171 |
ccaaaaaaataataatatagatttaatttgtatacaccgattgtatgattgttttttacacatgcatcaggtcagatcacaccacatgtttttgtggaga |
34825270 |
T |
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| Q |
108 |
tattt |
112 |
Q |
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||||| |
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| T |
34825271 |
tattt |
34825275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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