View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_60 (Length: 405)
Name: NF0809_high_60
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 4861396 - 4861782
Alignment:
| Q |
14 |
tcttactcaattgatataccaatacttttaacactaatatgaaagttttgtctatatcttttgttgtgtttcctctacccatctcttgtccgtacgtctc |
113 |
Q |
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| T |
4861396 |
tcttactcaattgatatacaaatacttttaacactaatatgaaagttttgtctatatcttttgttgtgtttcctctacccatctcttgtccgtacgtctc |
4861495 |
T |
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| Q |
114 |
gtttttctttctctttcatatattctgtaattgagtatccgtgcgtcttctcaatttttaattatatgcaatttgtaattaagaaaatgtaaattccatc |
213 |
Q |
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| T |
4861496 |
gtttttctttctctttcatatattctgtaattgagtatccgtgcgtcttctcaatttttaattatatgcaatttgtcattaagaaaatgtaaattccatc |
4861595 |
T |
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| Q |
214 |
cctattcatatctatgatgtatcaaaactatagtaac-aaccacgtacgtacgtacgtacacgaaacaaattcagaagtgggtctataaccttggtacgt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4861596 |
cctattcatatctatgatgtatcaaaactatagtaacaaaccacgtacgtacgtacgtacacgaaacaaattcagaagtgggtctataaccttggtacgt |
4861695 |
T |
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| Q |
313 |
atggctaggaaattaaaaagaagatgccaaatatcatacactgacaaaataatctagcaatcccctttgctcacttatctgtgctcc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
4861696 |
atggctaggaaattaaaaagaagatgccaaatatcatgcactgacaaaataatctatcaatcccctttgctcacttatttgtgctcc |
4861782 |
T |
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