View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_73 (Length: 377)
Name: NF0809_high_73
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 38287088 - 38286750
Alignment:
| Q |
10 |
aagaaaatagagagaaaatgatatacatactatggaatgagtgttgagaaattagagatgaggtaatttaaagtaagcaaattgaagtatatgcaaagtt |
109 |
Q |
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| T |
38287088 |
aagaaaatagagagaaaatgatatacatactatggaatgagtgttgagaaattagagatgaggtaatttaaagtaagcaaattgaagtatatgcaaagtt |
38286989 |
T |
|
| Q |
110 |
atatagttggtagttaactaaacaaataattaagagataggttaaagagggatttgccgactatcactgtattgtgatgattattatgtggcaaagaaaa |
209 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38286988 |
atatagttggtagttaattaaacaaataattaagagataggttaaagagggatttgccgactatcactgtattatgatgattattatgtggcaaagaaaa |
38286889 |
T |
|
| Q |
210 |
gaatcaacgacaatttcaattcattcattaattctatctatctatcaactcaaagcaaattatattgtaatttgtaaagcacacaataataataataaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38286888 |
gaatcaacgacaatttcaattcattcattaattctatctatctatcaactcaaagcaaattatattgtaattcgtaaagcacacaataataataataaac |
38286789 |
T |
|
| Q |
310 |
tccagcgactttgactttgccccacgtactccttgtaca |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
38286788 |
tccagcgactttgactttgccccacgtactccttgtaca |
38286750 |
T |
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