View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_74 (Length: 375)
Name: NF0809_high_74
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_74 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 363
Target Start/End: Original strand, 44958844 - 44959177
Alignment:
| Q |
30 |
gaaaagaccattatgaacatggcaagatgcatgtttaaagagaataagctaccacataacttcaggagtgaaacagtgtatgaaacatgttatgtgttga |
129 |
Q |
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| T |
44958844 |
gaaaagaccattatgaacatggaaagatgcatgtttaaagagaataagctaccacataacttcaggagtgaaacagtgtatgaaacatgttatgtgttga |
44958943 |
T |
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| Q |
130 |
acagaagtacccaaaaaaggttgatatacaaagtcaaatacttaccaaatagagatttgtagggaagggtgatgaaagaaaagtgttgaggcttaataaa |
229 |
Q |
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| T |
44958944 |
acagaagtacccaaaaaaggttgatatacaaagtcaaatacttaccaaatagagatttgtagggaagggtgatgaaagaaaagtgttgaggcttaataaa |
44959043 |
T |
|
| Q |
230 |
tcactctatggattaaagttagctcctagagcttggaataaaagaattgataactttatgcaacaaatgagttattccaagtgaaaagtggaatgacatt |
329 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44959044 |
tcactgtatggattaaagttagctcctagagcttggaataaaagaattgataactttatgcaacaaatgagttattccaagtgaaaagtggaatgacatt |
44959143 |
T |
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| Q |
330 |
tatgtcaaagactttaatgaagacaaccaagtat |
363 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
44959144 |
tatgtcaaagactttaatcaagacaaccaagtat |
44959177 |
T |
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