View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_high_78 (Length: 374)
Name: NF0809_high_78
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_78 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 52 - 277
Target Start/End: Complemental strand, 16645312 - 16645078
Alignment:
| Q |
52 |
aggtcttaatcttgatttaagttcttcaatatcctaacatagaggctaaaataaatgatggataatcataggcaaacacttgggaattttgcaatggtag |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16645312 |
aggtcttaatcttgatttaagttcttcaatatcctaacatagaggctaaaaaaaatgatggataatcataggcaaacacttgggaattttgcaatggtag |
16645213 |
T |
|
| Q |
152 |
cattactctttcttggttttattttcatt---------tctttcatatatttctccacccaattacttctatttcaacatgaaccactctaccagcagca |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16645212 |
cattactctttcttggttttattttcatttaccattggtctttcatatatttctccacccaattacttctatttcaacatgaaccactctgccagcagca |
16645113 |
T |
|
| Q |
243 |
atcaaacaaggtaccttcaaatcacacctatatat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
16645112 |
atcaaacaaggtaccttcaaatcacacctatatat |
16645078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 16645028 - 16644994
Alignment:
| Q |
329 |
tacatatacctatatgtatgaacacaataagtata |
363 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16645028 |
tacatatacctatatgtatgatcacaataagtata |
16644994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 59 - 267
Target Start/End: Complemental strand, 1520961 - 1520739
Alignment:
| Q |
59 |
aatcttgatttaagttcttcaatatcctaacatagaggctaaaataaa-----tgatggataatcataggcaaacacttgggaattttgcaatggtagca |
153 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||| || | ||| |||||||||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
1520961 |
aatcttgatttaatttgtacaatatcctaacatagaggtaaagaaaaaaataatgatggataatcttaggcaaacccttgggagttttgcaatggtagca |
1520862 |
T |
|
| Q |
154 |
ttactctttcttggttttattttcatt---------tctttcatatatttctccacccaattacttctatttcaacatgaaccactctaccagcagcaat |
244 |
Q |
| |
|
||||||||| |||||||||||||| || |||||| || ||||||||||||||||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
1520861 |
ttactctttattggttttattttcctttaccattggtctttctcatctttctccacccaattacttctatctcacaatgaaccactctgccagcagcaat |
1520762 |
T |
|
| Q |
245 |
caaacaaggtaccttcaaatcac |
267 |
Q |
| |
|
|||||| ||||| |||||||||| |
|
|
| T |
1520761 |
caaacatggtactttcaaatcac |
1520739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 59 - 265
Target Start/End: Complemental strand, 1516776 - 1516555
Alignment:
| Q |
59 |
aatcttgatttaagttcttcaatatcctaa-catagaggctaaaata-----aatgatggataatcataggcaaacacttgggaattttgcaatggtagc |
152 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||| || ||| ||||||||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
1516776 |
aatcttgatttaatttgttcaatatcctaaacatagaggtaaatatagaattaatgatggatagtcttaggcaaacacttgggagttttgcaatggtagc |
1516677 |
T |
|
| Q |
153 |
attactctttcttggttttattttcatt---------tctttcatatatttctccacccaattacttctatttcaacatgaaccactctaccagcagcaa |
243 |
Q |
| |
|
|||||||||| || ||||||||||| || || ||| || ||||||||||||||||||||||| ||| ||| |||||||| |||||||||| |
|
|
| T |
1516676 |
attactctttgttagttttattttcctttaccattggtcattcccatctttctccacccaattacttctatctcacaatggaccactctgccagcagcaa |
1516577 |
T |
|
| Q |
244 |
tcaaacaaggtaccttcaaatc |
265 |
Q |
| |
|
||||||| ||||| |||||||| |
|
|
| T |
1516576 |
tcaaacatggtacgttcaaatc |
1516555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 23087298 - 23087344
Alignment:
| Q |
131 |
ttgggaattttgcaatggtagcattactctttcttggttttattttc |
177 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
23087298 |
ttgggtattttgcaatggtagcattgctctttggtggttttattttc |
23087344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5097 times since January 2019
Visitors: 5754