View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_79 (Length: 371)
Name: NF0809_high_79
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_79 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 2661448 - 2661115
Alignment:
| Q |
8 |
ccaataatatcaatttaatcatataaatgtcataccttgttttcttcgggctgtttaggaagtagcaacatatggcattgagatggtgtagaaatctgaa |
107 |
Q |
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| T |
2661448 |
ccaataatatcaatttaatcatataaatgtcataccttgttttcttcgggctgtttaggaagtagcaacatatggcattgagatggtgtacaaatctgaa |
2661349 |
T |
|
| Q |
108 |
atacactttctgatattttgtgggatttttcaattaaatcaggttgcaggtcctccaaatttttaccactctaaaagaaaacagnnnnnnngttagcata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2661348 |
atacactttctgatattttgtgggatttttcaattaaatcaggttgcaggtcctccaaatttttaccactctaaaagaaaacagaaaaaaagttagcata |
2661249 |
T |
|
| Q |
208 |
agaagtttctagttgcattgtaaaaacataataatatgtaaacgaaatgtcaaacagtcaaatatttgtctatcaaggtaccatacaacacta-nnnnnn |
306 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2661248 |
agaagtttcta---gcattgtaaaaacataataatatgtaaacgaaatgtcaaacagccaaatatttgtctatcaaggtaccatacaacactattttttt |
2661152 |
T |
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| Q |
307 |
nnaaccttccgattctcacggatataacactacattt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
2661151 |
ttaaccttccgattctcacggatataacactacattt |
2661115 |
T |
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