View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_86 (Length: 361)
Name: NF0809_high_86
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_86 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 29 - 341
Target Start/End: Complemental strand, 29145217 - 29144905
Alignment:
| Q |
29 |
atactagacacaccttcaatttaaagtgtcgatgctacgagaaaagaaaactaacctggcttgaggaactcgatttcgatgcagggttggcttcattttg |
128 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
29145217 |
atactagacacaccttcaatttaaagtgttgatgctacgagaaaagaaaactaacctggcttgaggagcccgatttcgatgcagggttggcttcattttg |
29145118 |
T |
|
| Q |
129 |
accaacaacttgatcctttttatcatcaaccttagttaataccaagctagaatcataatctgaagagccatctaaaaaagttgtgtcgctgagcaaagat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145117 |
accaacaacttgatcctttttatcatcaaccttagttaataccaagctagaatcataatctgaagagccatctaaaaaagttgtgtcgctgagcaaagat |
29145018 |
T |
|
| Q |
229 |
ctagttgaaccatgtggagtaattgagtcagaatttggcttaaccaatctccttttcagaatggaatcaattgtcttagaagagtaactgttagtgacat |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29145017 |
ctagttgaaccatgtggagtaattgagtcagaatttggcttaaccaatctccttttcagaatggaatcaatcgtcttagaagagtaactgttagtgacat |
29144918 |
T |
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| Q |
329 |
tttcctctgtgct |
341 |
Q |
| |
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||||||||||||| |
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| T |
29144917 |
tttcctctgtgct |
29144905 |
T |
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