View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_10 (Length: 704)

Name: NF0809_low_10
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_10
NF0809_low_10
[»] chr2 (1 HSPs)
chr2 (41-696)||(43602086-43602728)


Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 41 - 696
Target Start/End: Original strand, 43602086 - 43602728
Alignment:
Q  41 atttccctcaaatgattccattattcatttgatattatatttttctctaaacataacctttcaaatatatggtgagtgtttggcctttctcatatagaaa 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43602086 atttccctcaaatgattccattattcatttgatattatatttttctctaaacataacctttcaaatatatggtgagtgtttggcctttctcatattgaaa 43602185  T
Q  141 aaagattttttactcataaccctaaactagttgtgagaagtgtagagaagctaaataaaaaacatgaaaaagagttataannnnnnnngtttgtccccat 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  43602186 aa-gattttttactcataaccctaaactagttgtgagaagtgtagagaagctaaataaaaaacatgaaaaagagttataattttttttttttgtccccat 43602284  T
Q  241 gatcataaacactggctcagagagcagttgtaaatgtaaacatacaaccaatatactgtatatgcaacttatttctttaatacaattcagctattgcaat 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||    
T  43602285 gatcataaacactggctcagagagcagttgtaaatgtaaacatacaaccaatatactgtatatgcaacttat------------attcagctattgcaat 43602372  T
Q  341 aaacaaagttatagcaaacatctactaccactatatttcataacctcattaattaattacaccaaacttcatattcataacccacaactcatcatcatca 440  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602373 aaacaaagttatagcaaacatctaccaccaatatatttcataacctcattaattaattacaccaaacttcatattcataacccacaactcatcatcatca 43602472  T
Q  441 taacattaaccaatactacttactacacatcaaaccattgatcatgaaatgatctttcttttgaagagaaataaaacttactaagaaatatcaatggact 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43602473 taacattaaccaatactacttactacacatcaaaccattgatcatgaaatgatctttcttttgaagagaaatacaacttactaagaaatatcaatggact 43602572  T
Q  541 ctcccaactcacctgattttgcttttacatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttctc 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602573 ctcccaactcacctgattttgcttttacatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttctc 43602672  T
Q  641 aaaactctcatgtccaactttctcacgcagtcttcaaaactctccagtttcatctc 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602673 aaaactctcatgtccaactttctcacgcagtcttcaaaactctccagtttcatctc 43602728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4799 times since January 2019
Visitors: 5752