View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0809_low_101 (Length: 358)
Name: NF0809_low_101
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 3719753 - 3719435
Alignment:
| Q | 30 | ccatcttctgctaatgcacaagctgcatcattcttaagctcttcaattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccacct | 129 | Q |
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| T | 3719753 | ccatcttctgctaatgcacaagctgcatcatttttaagctcttccattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccacct | 3719654 | T |
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| Q | 130 | tagcaatttcctctctttctgcaatgccattctcattaaattttatcttcaaacccactttgagtccctctactaataaaatagcattcattatttgatc | 229 | Q |
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| T | 3719653 | tagcaatttcctctctttctgcaattccattctcattaaattttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttgatc | 3719554 | T |
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| Q | 230 | accaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtga | 329 | Q |
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| T | 3719553 | accaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaagtgtga | 3719454 | T |
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| Q | 330 | ctcaggactttggtctgtg | 348 | Q |
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| T | 3719453 | ctcaggactttggtttgtg | 3719435 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 3708244 - 3707926
Alignment:
| Q | 30 | ccatcttctgctaatgcacaagctgcatcattcttaagctcttcaattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccacct | 129 | Q |
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| T | 3708244 | ccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcactccgttcttctccgagcattagatgtctaaccacct | 3708145 | T |
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| Q | 130 | tagcaatttcctctctttctgcaatgccattctcattaaattttatcttcaaacccactttgagtccctctactaataaaatagcattcattatttgatc | 229 | Q |
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| T | 3708144 | tagcaatttcctctctttctgcaatgccattctcattaaattttatcttcaaacccactttaagtccctctactattaaaatagcattcattatttgatc | 3708045 | T |
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| Q | 230 | accaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtga | 329 | Q |
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| T | 3708044 | accaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtga | 3707945 | T |
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| Q | 330 | ctcaggactttggtctgtg | 348 | Q |
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| T | 3707944 | cttaggattttggtttgtg | 3707926 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 3769951 - 3770269
Alignment:
| Q | 30 | ccatcttctgctaatgcacaagctgcatcattcttaagctcttcaattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccacct | 129 | Q |
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| T | 3769951 | ccatctcctgctaatgcacaagctgcttcatcttttagctcttcaattctttgtcgaatctcactccgttcttctccgagcattagatctttaaccacct | 3770050 | T |
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| Q | 130 | tagcaatttcctctctttctgcaatgccattctcattaaattttatcttcaaacccactttgagtccctctactaataaaatagcattcattatttgatc | 229 | Q |
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| T | 3770051 | tagcaatttcctctctttctgcaatgtcattctcattaaattttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttgatc | 3770150 | T |
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| Q | 230 | accaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtga | 329 | Q |
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| T | 3770151 | accaaacaatggccaagttaccattggcactcccgacacaatactctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaattgtga | 3770250 | T |
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| Q | 330 | ctcaggactttggtctgtg | 348 | Q |
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| T | 3770251 | cttaggattttggtttgtg | 3770269 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 3701477 - 3701159
Alignment:
| Q | 30 | ccatcttctgctaatgcacaagctgcatcattcttaagctcttcaattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccacct | 129 | Q |
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| T | 3701477 | ccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcacttcgttcttctccgagcattagatctttaaccacct | 3701378 | T |
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| Q | 130 | tagcaatttcctctctttctgcaatgccattctcattaaattttatcttcaaacccactttgagtccctctactaataaaatagcattcattatttgatc | 229 | Q |
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| T | 3701377 | tagcaatttccactctttctgcaatgccattctcattaaatttgatcttcaaacccactttgagtccctctgtcaacaaaacagcattcattctttgctc | 3701278 | T |
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| Q | 230 | accaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtga | 329 | Q |
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| T | 3701277 | gccaaataatggccatgttatcattggcactcctaacacgatactctcaagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaagtgtga | 3701178 | T |
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| Q | 330 | ctcaggactttggtctgtg | 348 | Q |
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| T | 3701177 | ctaaggattttggtttgtg | 3701159 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 30 - 328
Target Start/End: Original strand, 33004863 - 33005161
Alignment:
| Q | 30 | ccatcttctgctaatgcacaagctgcatcattcttaagctcttcaattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccacct | 129 | Q |
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| T | 33004863 | ccatcttctgctaatgcacaagtagaagcatatttaagctcttcaattctttgttcaatttcactcctttcttcaccaagcattaaatctctaatcacct | 33004962 | T |
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| Q | 130 | tagcaatttcctc-tctttctgcaatgccattctcattaaattttatcttcaaacccactttgagtccctctactaataaaatagcattcattatttgat | 228 | Q |
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| T | 33004963 | tagcaatttcctcctctttctgcaatgccactctcattaa-ttttaccttcaaacccaccttgagtccctctattaacaaaatagcattcaatctttgct | 33005061 | T |
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| Q | 229 | caccaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtg | 328 | Q |
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| T | 33005062 | cgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtg | 33005161 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 30 - 328
Target Start/End: Original strand, 3777621 - 3777916
Alignment:
| Q | 30 | ccatcttctgctaatgcacaagctgcatcattcttaagctcttcaattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccacct | 129 | Q |
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| T | 3777621 | ccatcttctgctaatgcaccagcagcaacatctttaagatcttcaattctttgtcgaatctcacttcgttcttcacctatcattagatctctaatcacct | 3777720 | T |
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| Q | 130 | tagcaatttcctctctttctgcaatgccattctcattaaattttatcttcaaacccactttgagtccctctactaataaaatagcattcattatttgatc | 229 | Q |
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| T | 3777721 | tagcaatttcatctctttcagctatgccaatctcattaaatcttaccttcaaaccaactccgagtccct---ctaacaacatagcattcattctttgctc | 3777817 | T |
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| Q | 230 | accaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtg | 328 | Q |
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| T | 3777818 | tgaaaacaatggccaagttatcattggcactccgaacacaagactctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatgtg | 3777916 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 11292341 - 11292400
Alignment:
| Q | 275 | ctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgactcag | 334 | Q |
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| T | 11292341 | ctcaatcgttgaattccaaccacaatgtgataagaatccacctgttgatgtgtgactcag | 11292400 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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