View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_105 (Length: 350)
Name: NF0809_low_105
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 38 - 337
Target Start/End: Original strand, 29320691 - 29320990
Alignment:
| Q |
38 |
ttaaaattccacaaattttgaaccttcttatacatgtttattatgcttgcagtcaagtttacatggccaaagagatcgaaaccggtgaaattgtcgctct |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29320691 |
ttaaaattccacaaattttgaaccttcttatacatgtttattatgcttgcagtcaagtttacatggccaaagagatcgaaactggtgaaattgtcgctct |
29320790 |
T |
|
| Q |
138 |
caagaaaatacgtatggataatgggagaaggagtatgaatatgaatgtattttcaaacatttcattcctatgtgcaattctgtgtaatttgtaaaagata |
237 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29320791 |
caagaaaatacgtatggataatgggagaaggagtatgaatatgaatgtattttcaaacatttcattcctatgtgcaattctgtgttatttgtaaaagatt |
29320890 |
T |
|
| Q |
238 |
gataatttgtaatttactcatatgtttgattgaagattgattcttattcttctctttaagaataagaaatggacgctaacaaacaattttgatggtgcct |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29320891 |
gataatttgtaatttactcatatgtttgattgaagattgattcttattcttctctttaagaataagaaatgaacgctaacaaacaattttgatggtgcct |
29320990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 38 - 337
Target Start/End: Complemental strand, 9337668 - 9337369
Alignment:
| Q |
38 |
ttaaaattccacaaattttgaaccttcttatacatgtttattatgcttgcagtcaagtttacatggccaaagagatcgaaaccggtgaaattgtcgctct |
137 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9337668 |
ttaaaattccaacaattttgaaccttcttatacatgtttattatgcttgcagtcaagtttacatggccaaagagatcgaaaccggtgaaattgtccctct |
9337569 |
T |
|
| Q |
138 |
caagaaaatacgtatggataatgggagaaggagtatgaatatgaatgtattttcaaacatttcattcctatgtgcaattctgtgtaatttgtaaaagata |
237 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
9337568 |
caagaaaatacgtatggataatgggagaaggagtatgaatatgaatgtattttcaaacatttcattcctatgtgcaactctgtgtagtttgtaaaagata |
9337469 |
T |
|
| Q |
238 |
gataatttgtaatttactcatatgtttgattgaagattgattcttattcttctctttaagaataagaaatggacgctaacaaacaattttgatggtgcct |
337 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9337468 |
gataatttgtaatttactcgtatgtttgattgaagattgattcttattcttctctttaagaataagaaatggacgctaacaaacaattttgatggtgcct |
9337369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 38 - 337
Target Start/End: Original strand, 40149600 - 40149899
Alignment:
| Q |
38 |
ttaaaattccacaaattttgaaccttcttatacatgtttattatgcttgcagtcaagtttacatggccaaagagatcgaaaccggtgaaattgtcgctct |
137 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40149600 |
ttaaaattccaacaattttgaaccttcttatacatgtttattatgcttgcagtcatgtttacatggccaaagagatcgaaaccggtgaaattgtcgctct |
40149699 |
T |
|
| Q |
138 |
caagaaaatacgtatggataatgggagaaggagtatgaatatgaatgtattttcaaacatttcattcctatgtgcaattctgtgtaatttgtaaaagata |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
40149700 |
caagaaaatacgtatggataatgggagaaggagtatgaatatgaatgtattttcaaacatttcattcctatgtgcaactctgtgtagtttgtaaaagata |
40149799 |
T |
|
| Q |
238 |
gataatttgtaatttactcatatgtttgattgaagattgattcttattcttctctttaagaataagaaatggacgctaacaaacaattttgatggtgcct |
337 |
Q |
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|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40149800 |
gataatttgtaatttactcgtatgtttgattgaagtttgattcttattcttctctttaagaataagaaatggacgctaacaaacaattttgatggtgcct |
40149899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 14417414 - 14417253
Alignment:
| Q |
70 |
catgtttattatgcttgcagtcaagtttacatggccaaagagatcgaaaccggtgaaattgtcgctctcaagaaaatacgtatggataatg--ggagaag |
167 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
14417414 |
catgtttattatacttgcagtcaagtttacatggcgaaagagatcgaaaccggtgaaattgttgctctcaagaaaatacgtatggataatgaaagagaag |
14417315 |
T |
|
| Q |
168 |
gagtatgaatatga---atgtattttcaaacatttcattcctatgtgcaattctgtgtaatt |
226 |
Q |
| |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14417314 |
gggtatgaatatgaattatgtattttcaaacatttcattcctatgtgcaattctgtgtaatt |
14417253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 14270979 - 14270856
Alignment:
| Q |
108 |
agagatcgaaaccggtgaaattgtcgctctcaagaaaatacgtatggataatg--ggagaaggagtatgaatatga---atgtattttcaaacatttcat |
202 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
14270979 |
agagatcgaaactggtgaaattgttgctctcaagaaaatacgtatggataatgaaagagaaggggtatgaatatgaattatgtattttcaaacatttcat |
14270880 |
T |
|
| Q |
203 |
tcctatgtgcaattctgtgtaatt |
226 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
14270879 |
tccgatgtgcaattctgtgtaatt |
14270856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 230 - 337
Target Start/End: Original strand, 38477114 - 38477222
Alignment:
| Q |
230 |
aaaagatagataatttgtaatttactcatatgtttgattgaagattgattcttattcttctctttaagaataagaaatggacgctaa-caaacaattttg |
328 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
38477114 |
aaaagatagataatttgtaaattactcgtatgcttgattgaagattgattcttattcttctctttaagaataagaaatgaacgctaagaaaacaattttg |
38477213 |
T |
|
| Q |
329 |
atggtgcct |
337 |
Q |
| |
|
||||||||| |
|
|
| T |
38477214 |
atggtgcct |
38477222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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