View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_109 (Length: 345)
Name: NF0809_low_109
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_109 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 36397872 - 36397779
Alignment:
| Q |
246 |
caccctattaaagatgtttatattgaactacatacaacctataaactggtactcccttcccttgacatagctcaagagccaactattattcctt |
339 |
Q |
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| T |
36397872 |
cacccaattaaagatgtttatattgaactacatacaacctataaactggtactcccttcccttgacatagctcaagtgccaactattattcctt |
36397779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 36397949 - 36397871
Alignment:
| Q |
84 |
catattgctattcttcttttttattcaattaatctcaagttttggatcagtataaacaaccaccatttaagtaaaaaca |
162 |
Q |
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| T |
36397949 |
catattgctattcttcttttttagtcaattaatctcaagttttggatcagtataaacaaccaccatttaagtaaaaaca |
36397871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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