View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_11 (Length: 703)

Name: NF0809_low_11
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_11
NF0809_low_11
[»] chr2 (1 HSPs)
chr2 (41-695)||(43602086-43602728)


Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 41 - 695
Target Start/End: Original strand, 43602086 - 43602728
Alignment:
Q  41 atttccctcaaatgattccattattcatttgatattatatttttctctaaacataacctttcaaatatatggtgagtgtttggcctttctcatatagaaa 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43602086 atttccctcaaatgattccattattcatttgatattatatttttctctaaacataacctttcaaatatatggtgagtgtttggcctttctcatattgaaa 43602185  T
Q  141 aaagattttttactcataaccctaaactagttgtgagaagtgtagagaagctaaataaaaaacatgaaaaagagttataannnnnnngttt-gtccccat 239  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||    
T  43602186 aa-gattttttactcataaccctaaactagttgtgagaagtgtagagaagctaaataaaaaacatgaaaaagagttataattttttttttttgtccccat 43602284  T
Q  240 gatcataaacactggctcagagagcagttgtaaatgtaaacatacaaccaatatactgtatatgcaacttatttctttaatacaattcagctattgcaat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||    
T  43602285 gatcataaacactggctcagagagcagttgtaaatgtaaacatacaaccaatatactgtatatgcaacttat------------attcagctattgcaat 43602372  T
Q  340 aaacaaagttatagcaaacatctactaccactatatttcataacctcattaattaattacaccaaacttcatattcataacccacaactcatcatcatca 439  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602373 aaacaaagttatagcaaacatctaccaccaatatatttcataacctcattaattaattacaccaaacttcatattcataacccacaactcatcatcatca 43602472  T
Q  440 taacattaaccaatactacttactacacatcaaaccattgatcatgaaatgatctttcttttgaagagaaataaaacttactaagaaatatcaatggact 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43602473 taacattaaccaatactacttactacacatcaaaccattgatcatgaaatgatctttcttttgaagagaaatacaacttactaagaaatatcaatggact 43602572  T
Q  540 ctcccaactcacctgattttgcttttacatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttctc 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602573 ctcccaactcacctgattttgcttttacatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttctc 43602672  T
Q  640 aaaactctcatgtccaactttctcacgcagtcttcaaaactctccagtttcatctc 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602673 aaaactctcatgtccaactttctcacgcagtcttcaaaactctccagtttcatctc 43602728  T

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