View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_110 (Length: 344)
Name: NF0809_low_110
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_110 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 181 - 337
Target Start/End: Original strand, 26407483 - 26407639
Alignment:
| Q |
181 |
tgtgagattcacttttcaaatattagatatcaaccacaaattcactcaagcgtccgttatatctttggaatatattcaatagtgtatttgtaagttcaga |
280 |
Q |
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| T |
26407483 |
tgtgagattcacttctcaaatattagatatcaaccacaaattcactccagcctccgttatatctttggaatatattcaatagtgtatttgtaagttcaga |
26407582 |
T |
|
| Q |
281 |
ttcacttgtcactaatcaaattgaacttaagagaaacaaaagttcatattcatctca |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26407583 |
ttcacttgtcactaatcaaattgaacttaagagaaacaagagttcatattcatctca |
26407639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 26407231 - 26407336
Alignment:
| Q |
23 |
atcatcaaggattcaagggaaaacaacaataaaatacttttcaattcaaaaatcaacaagaaataacaatctagattccagaaaccacctttcaatttgg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26407231 |
atcatcaaggattcaagggaaaacaacaataaaatacttttcaattcaaaaatcaacaagaaataacaatctagattccagaaaccacctttcaatttgg |
26407330 |
T |
|
| Q |
123 |
attgtg |
128 |
Q |
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|||||| |
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| T |
26407331 |
attgtg |
26407336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 26407369 - 26407464
Alignment:
| Q |
181 |
tgtgagattcacttttcaaatattagatatcaaccacaaattcactcaagcgtccgttatatctttggaatatattcaatagtgtatttgtaagtt |
276 |
Q |
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| T |
26407369 |
tgtgagattcacttctcaaatattagatatcaaccacaaattcactcaagcctccgttatatcttttgaatatattcaatagtgtatttggaagtt |
26407464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 11434062 - 11434178
Alignment:
| Q |
216 |
acaaattcactcaagcgtccgttatatctttggaatatattcaatagtgtatttg-taagttcagattcacttgtcactaatcaaattgaacttaagaga |
314 |
Q |
| |
|
|||||| ||| ||||| ||| || ||||||||||||||||| |||||||||||| ||||||| |||||||||| | |||| ||||||||| | | | |
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| T |
11434062 |
acaaatacacacaagcctccattgtatctttggaatatattttatagtgtatttgaaaagttcaaattcacttgtgtgtgatcagattgaactt-atata |
11434160 |
T |
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| Q |
315 |
aacaaaagttcatattca |
332 |
Q |
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|||||||||||| ||||| |
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| T |
11434161 |
aacaaaagttcagattca |
11434178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 7170211 - 7170137
Alignment:
| Q |
196 |
tcaaatattagatatcaaccacaaattcactcaagcgtccgttatatctttggaatatattcaatagtgtatttg |
270 |
Q |
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||||| ||||||| ||| ||||||| ||||||||| ||| |||||||| ||||| || ||| |||||||||||| |
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| T |
7170211 |
tcaaacattagattgcaagcacaaatacactcaagcctccattatatctctggaacatcttctatagtgtatttg |
7170137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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