View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_111 (Length: 343)

Name: NF0809_low_111
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_111
NF0809_low_111
[»] chr5 (2 HSPs)
chr5 (99-335)||(35865030-35865266)
chr5 (99-274)||(34814835-34815023)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 99 - 335
Target Start/End: Complemental strand, 35865266 - 35865030
Alignment:
Q  99 caggggactgtgctcaatttggaaaaccatccccacctccaccaaatgaaacaacgataggtgagtagcatatcaatcacttgactacgtgtaaacacca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35865266 caggggactgtgctcaatttggaaaaccatccccacctccaccaaatgaaacaacgataggtgagtagcatatcaatcacttgactacgtgtaaacacca 35865167  T
Q  199 atattttcaataaacctacttgtaaacttgtgctaatttcacctctgttgcatttaatttaatttaagccatatttccatatgatgtgccctacgtgaat 298  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35865166 atattttcaataagcctacttgtaaacttgtgctaatttcacctcagttgcatttaatttaatttaagccatatttccatatgatgtgccctacgtgaat 35865067  T
Q  299 atgtcttccgtttgaaaactaatctactatctgtgct 335  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  35865066 atgtcttccgtttgaaaacaaatctactatcagtgct 35865030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 34815023 - 34814835
Alignment:
Q  99 caggggactgtgctcaatttggaaaaccatccccacctccaccaaatgaaacaacgataggtgagtagcatatcaatcacttgactacgtgtaaacacca 198  Q
    ||||||| | ||||| ||||  || ||| ||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  34815023 caggggattatgctcgatttccaataccctccccccctccaccagatgaaccaaagataggtgagtagcatatcaatcacttgactgcttgtaaacacca 34814924  T
Q  199 atattttcaa-------------taaacctacttgtaaacttgtgctaatttcacctctgttgcatttaatttaatttaagccatattt 274  Q
    | ||||||||             ||||||||||||||||||||| |||||||||||||  ||||| || || |||||||||||||||||    
T  34814923 agattttcaataaagcttttcaataaacctacttgtaaacttgtactaatttcacctcaattgcagttcatctaatttaagccatattt 34814835  T

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