View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_112 (Length: 340)
Name: NF0809_low_112
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_112 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 7035439 - 7035731
Alignment:
| Q |
10 |
atcaaaagccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7035439 |
atcaaaagccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaaccaagttcaactcactat |
7035538 |
T |
|
| Q |
110 |
agggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacattgattataagtagcttgacatatcaaagaatt |
209 |
Q |
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| T |
7035539 |
agggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacatt-----------gcttgacatatcaaagaatt |
7035627 |
T |
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| Q |
210 |
ttcccctcaacaaaggtagaatgaaatagccttcaaacaaacagcctctttcggttaagaatccaatagtaagaaattcaattgcaattgatagctaacc |
309 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035628 |
ttcccctcaacaaaggtagaatgaaatagcctt----caaacagcctctttcggttaagaatccaatagtaagaaattcaattgcaattgatagctaacc |
7035723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 7896672 - 7896973
Alignment:
| Q |
10 |
atcaaaagccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactat |
109 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |
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| T |
7896672 |
atcaaaaggcaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcacaaagacacattaactaagttcaactcaatat |
7896771 |
T |
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| Q |
110 |
agggaaaagaataataatacattgatttc--------gtttgaagc-------atgccagtaaaaaacatgtgttaaaaacattgattataagtagcttg |
194 |
Q |
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| T |
7896772 |
agggaaaagaataataatacagtgatttcgtgattttgtttgaagcatgcatgatgccagtaaaaaacatgtgttaaaaaca---------------ttg |
7896856 |
T |
|
| Q |
195 |
acatatcaaagaattttcccctcaacaaaggtagaatgaaatagccttcaaacaaacagcctctttcggttaagaatccaatagtaagaaattcaattgc |
294 |
Q |
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| T |
7896857 |
acatatcaaagaattttcccctcaacaaaggtagaatgaaatagcctt----caaacagcctctttcggttaagaatccaatagtaagaaattcaattgc |
7896952 |
T |
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| Q |
295 |
aattgatagctaacccacata |
315 |
Q |
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| T |
7896953 |
aattgatagctaacccacata |
7896973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 303
Target Start/End: Original strand, 7039080 - 7039277
Alignment:
| Q |
103 |
tcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacattgattataagtagcttgacatatca |
202 |
Q |
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||||| ||||||||||||||||| || | ||| || ||||||||| | |||||||| ||||||| ||||||||||| ||| ||| ||||||||| ||| |
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| T |
7039080 |
tcactttagggaaaagaataatactagaaagatgtcatttgaagcagggcagtaaaa--catgtgtgaaaaacattgaatatgagtggcttgacatttca |
7039177 |
T |
|
| Q |
203 |
aagaattttcccctcaacaaaggtagaatgaaatagccttcaaacaaacagcctct-ttcggttaagaatccaatagt-aagaaattcaa-ttgcaattg |
299 |
Q |
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|||||||||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||||||| ||||| || |||||||| ||||||||| |
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| T |
7039178 |
aagaattttcccctcaacaagggtagtatgaaatagcct----ataaacagcctctgttcggttaagaatccgatagtaaataaattcaacttgcaattg |
7039273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 7880819 - 7880935
Alignment:
| Q |
62 |
atctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaa |
161 |
Q |
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||||||||||| ||| |||| ||||||| || |||| |||||||| ||||||||||||||||| || | ||| || ||||||||| | |||| |||| |
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| T |
7880819 |
atctttgacaacctcgccaagacacatttacaaagtctaactcactttagggaaaagaataatactagaaagatgtcatttgaagcagggcagt--aaaa |
7880916 |
T |
|
| Q |
162 |
catgtgttaaaaacattga |
180 |
Q |
| |
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||||||| ||||||||||| |
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| T |
7880917 |
catgtgtgaaaaacattga |
7880935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 29380083 - 29380169
Alignment:
| Q |
200 |
tcaaagaattttcccctcaacaaaggtagaatgaaatagccttcaaacaaacagcctct-ttcggttaagaatccaatagtaagaaattcaa |
290 |
Q |
| |
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||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||||| || |||||| |||||||||||||||||||||| |
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| T |
29380083 |
tcaaagaattttcccttcaacaagggtagtatgaaatagcctt----taaacagcctctgttgggttaa-aatccaatagtaagaaattcaa |
29380169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 29379045 - 29379148
Alignment:
| Q |
22 |
catagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaagaat |
121 |
Q |
| |
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|||||| |||||||| |||||||| | ||||||||| ||||| |||||| |||||||| ||||||| | |||| |||||||| |||| |||||||| |
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| T |
29379045 |
catagtaaccatccactcataaatttttctgtagtatcacatccttgacagcctcaccaagacacatttataaagtataactcactttaggtaaaagaat |
29379144 |
T |
|
| Q |
122 |
aata |
125 |
Q |
| |
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|||| |
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|
| T |
29379145 |
aata |
29379148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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