View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_113 (Length: 339)
Name: NF0809_low_113
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_113 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 52518190 - 52518492
Alignment:
| Q |
8 |
ccaacaatattgaaattataattacatcttactttttcaaacccaccacgagaagtcacttcaacaaagaggcgatgtaaatccaattcccttcccccaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52518190 |
ccaacaatattgaaattataattacatcttactttttcaaacccaccacgagaagtcacttcaacaaagaggcgatgtaaatccaattcccttcccccaa |
52518289 |
T |
|
| Q |
108 |
taacaggaatcctgcaataaaattccaaatgttttttgaagttgcaaagttatacaagtaaatggcattaatagtgtatagtatctccaaaaatgcaaaa |
207 |
Q |
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| T |
52518290 |
taacaggaatcctgcaataaaattccaaatgttttttgaagttgcaaagttatacaagtaaatggcattaatagtgtatagtatctccaaaaatgcaaaa |
52518389 |
T |
|
| Q |
208 |
ctagatgctgagactgcactgctaagccataatttgtttaccacagtgcctggtcccatccaactagaaaaccatttatatccagaaaacataacaaaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52518390 |
ctagatgctgagactgcactgctaagccataatttgtttaccacagtgcctggtcccatccaactagaaaaccatttatatccagaaaacataacaaaca |
52518489 |
T |
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| Q |
308 |
tgg |
310 |
Q |
| |
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||| |
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| T |
52518490 |
tgg |
52518492 |
T |
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