View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_116 (Length: 329)
Name: NF0809_low_116
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_116 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 29451526 - 29451251
Alignment:
| Q |
10 |
aagaatattcgcaaagggatttagactcggggcttcaaaggagtaaaatatgatattaggg-acaaaacaaaataataataagagtagacaaaggaacgt |
108 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29451526 |
aagaaaattcgcaaagggatttggactcggggcttcaaaggagtaaaatatgatattaggggacaaaacaaaataataataagagtagacaaagaaacgt |
29451427 |
T |
|
| Q |
109 |
acgatggaataggaaaggtgctacctctaggtgttaaagagaaagagaggacgtgcatggacccaaattgagaaggttgattcttctattccagtcatag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29451426 |
acgatggaataggaaaggtgctacctctaggtgttagagagaaagagaggacgtgcatagacccaaattgagaaggttgattcttctattccagtcatag |
29451327 |
T |
|
| Q |
209 |
tatggagttaaggcaaccaattgattttaagggacttaaaatcatattaaaagaagaggtattagagtgaaaggga |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29451326 |
tatggagttaaggcaaccaattgattttaagggacttaaaatcatattaaaagatgaggtattagagtgaaaggga |
29451251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 282
Target Start/End: Complemental strand, 6308335 - 6308201
Alignment:
| Q |
149 |
gaaagagaggacgtgcatggacccaaattgagaaggttgattcttctattccagtcatagtatggagttaaggcaaccaattgattttaagggacttaaa |
248 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||||||||||| |||||||| |||||||||||||| | ||||||| ||||||| |||||||||||| || |
|
|
| T |
6308335 |
gaaagagaggacgtgcttgtacccaaaatgagaaggttgatttttctattcaagtcatagtatggaatcaaggcaatcaattgaatttaagggactt-aa |
6308237 |
T |
|
| Q |
249 |
atcatattaaaagaagag--gtattagagtgaaagg |
282 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |
|
|
| T |
6308236 |
atcatattaaaagaggaggtgtattagagtgaaagg |
6308201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 107566 - 107437
Alignment:
| Q |
150 |
aaagagaggacgtgcatggacccaaattgagaaggttgattcttctattccagtcatagtatggagttaaggcaaccaattgattttaagggacttaaaa |
249 |
Q |
| |
|
||||||||||||||| || | ||||| |||||||||||||| |||||||| ||| |||||||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
107566 |
aaagagaggacgtgcttgtatccaaaatgagaaggttgatttttctattcaagttatagtatggaatcaaggcaatcaattgattttaagggacttaaaa |
107467 |
T |
|
| Q |
250 |
tcatattaaaagaagaggtattagagtgaaa |
280 |
Q |
| |
|
||||||||| || ||||||||||||||||| |
|
|
| T |
107466 |
tcatattaagag-tgaggtattagagtgaaa |
107437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 107830 - 107784
Alignment:
| Q |
97 |
acaaaggaacgtacgatggaataggaaaggtgctacctctaggtgtt |
143 |
Q |
| |
|
||||||||| |||||| |||||||||| |||||||||||||||||| |
|
|
| T |
107830 |
acaaaggaatttacgatagaataggaaaagtgctacctctaggtgtt |
107784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 35916530 - 35916575
Alignment:
| Q |
278 |
aaagggattgatgttgtttcgaaagatgcacatacaaagaaagagg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35916530 |
aaagggattgatgttgtttcgaaagatgcacatacaaagaaagagg |
35916575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 3280179 - 3280237
Alignment:
| Q |
203 |
tcatagtatggagttaaggcaaccaattgattttaagggacttaaaatcatattaaaag |
261 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3280179 |
tcatagtatgaatttaaggcattcaattgattttaagggatttaaaatcatattaaaag |
3280237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5451 times since January 2019
Visitors: 5757