View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_117 (Length: 328)
Name: NF0809_low_117
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_117 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 161 - 322
Target Start/End: Original strand, 48288986 - 48289147
Alignment:
| Q |
161 |
acttaaactatatcatattcatatgtagatgttaccttggattggggctgtttttcaccatcttctttccgtacttcctccatctgaacccgtcatccag |
260 |
Q |
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| T |
48288986 |
acttaaactatatcatattcatatgtagatgttaccttggattggggctgtttttcaccatcttctttccgtacttcctccatctgaacccatcatccag |
48289085 |
T |
|
| Q |
261 |
aatttcaacctctgacttggttttgaatgcaactttatgatctctaatttccttcatctcac |
322 |
Q |
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| T |
48289086 |
aatttcaacctctgacttggttttgaatgcaactttatgatctctaatttccttcttctcac |
48289147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 48288911 - 48288958
Alignment:
| Q |
46 |
tatagtagttcctgtaatcaaattggaaattctctcaattaacataaa |
93 |
Q |
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| T |
48288911 |
tatagtagttcctgtaatcaaattggaaattctctcaattaacataaa |
48288958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 3734425 - 3734526
Alignment:
| Q |
193 |
taccttggattggggctgtttttcaccatcttctttccgtacttcctccatctgaacccgtcatccagaatttcaacctctgacttggttttgaatgcaa |
292 |
Q |
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||||||||||| ||||| || || ||||| |||||||| ||||||||||||||| |||| ||||| || ||||||| | |||||| ||||||||||||| |
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| T |
3734425 |
taccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtatttcaatcagtgactttgttttgaatgcaa |
3734524 |
T |
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| Q |
293 |
ct |
294 |
Q |
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|| |
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| T |
3734525 |
ct |
3734526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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