View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_12 (Length: 685)

Name: NF0809_low_12
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_12
NF0809_low_12
[»] chr6 (11 HSPs)
chr6 (426-656)||(1375335-1375567)
chr6 (426-656)||(1383083-1383315)
chr6 (193-365)||(1375630-1375802)
chr6 (193-365)||(1383378-1383550)
chr6 (11-74)||(20713350-20713413)
chr6 (459-634)||(1372562-1372738)
chr6 (459-634)||(1380310-1380486)
chr6 (226-307)||(1367951-1368032)
chr6 (306-347)||(1372829-1372870)
chr6 (306-347)||(1380577-1380618)
chr6 (99-143)||(20713281-20713325)
[»] chr8 (2 HSPs)
chr8 (11-74)||(20237461-20237524)
chr8 (99-143)||(20237547-20237591)
[»] chr7 (4 HSPs)
chr7 (11-74)||(44369954-44370017)
chr7 (11-74)||(23560548-23560611)
chr7 (99-143)||(23560636-23560680)
chr7 (99-143)||(44369886-44369930)
[»] chr5 (2 HSPs)
chr5 (11-74)||(27691489-27691552)
chr5 (99-143)||(27691420-27691464)
[»] chr4 (2 HSPs)
chr4 (11-74)||(49226678-49226741)
chr4 (99-143)||(49226610-49226654)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-101; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 426 - 656
Target Start/End: Complemental strand, 1375567 - 1375335
Alignment:
Q  426 ggaaaccaaagcaatattattttgaattaaaattacaacattgatttttcaacttannnnnnnatgaaaatcttaaa-gactattttgaaatgtcatcca 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||    
T  1375567 ggaaaccaaagcaatattattttgaattaaaattacaacattgatttttcaacttatttttttatgaaaatcttaaaagactattttgaaatgtcatcca 1375468  T
Q  525 aagcaacaacacgctctcaagacttttaaacatccaccgccttgaggatgaccccttgccttacaagatgttgcacac-aatcatcactacctggacatg 623  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1375467 aagcaacaacacgctcttaagacttttaaacatccaccaccttgaggatgaccccttgccttacaagatgttgcacacaaatcatcactacctggacatg 1375368  T
Q  624 tttccataggaatgcagaaaatatattcggcta 656  Q
    |||||||||||||||||||||||||||||||||    
T  1375367 tttccataggaatgcagaaaatatattcggcta 1375335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 426 - 656
Target Start/End: Complemental strand, 1383315 - 1383083
Alignment:
Q  426 ggaaaccaaagcaatattattttgaattaaaattacaacattgatttttcaacttannnnnnnatgaaaatcttaaa-gactattttgaaatgtcatcca 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||    
T  1383315 ggaaaccaaagcaatattattttgaattaaaattacaacattgatttttcaacttatttttttatgaaaatcttaaaagactattttgaaatgtcatcca 1383216  T
Q  525 aagcaacaacacgctctcaagacttttaaacatccaccgccttgaggatgaccccttgccttacaagatgttgcacac-aatcatcactacctggacatg 623  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1383215 aagcaacaacacgctcttaagacttttaaacatccaccaccttgaggatgaccccttgccttacaagatgttgcacacaaatcatcactacctggacatg 1383116  T
Q  624 tttccataggaatgcagaaaatatattcggcta 656  Q
    |||||||||||||||||||||||||||||||||    
T  1383115 tttccataggaatgcagaaaatatattcggcta 1383083  T

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Target: chr6; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 193 - 365
Target Start/End: Complemental strand, 1375802 - 1375630
Alignment:
Q  193 ttatcttaaattaagttagaggacgaaatatataatttgaccaaaacaaattagttcacaaataacatttttgtcattttattattttcctattcgccaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1375802 ttatcttaaattaagttagaggacgaaatatataatttgaccaaaacaaattagttcacaaataacatttttgtcattttattattttcctattcgccaa 1375703  T
Q  293 caaattctaaaataatattctcacaaccaaattactaaattgcaataacatagaccaattgtgtggttgttgt 365  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1375702 aaaattctaaaataatattctcacaaccaaattactaaattgcaataacatagaccaattgtgtggttgttgt 1375630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 193 - 365
Target Start/End: Complemental strand, 1383550 - 1383378
Alignment:
Q  193 ttatcttaaattaagttagaggacgaaatatataatttgaccaaaacaaattagttcacaaataacatttttgtcattttattattttcctattcgccaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1383550 ttatcttaaattaagttagaggacgaaatatataatttgaccaaaacaaattagttcacaaataacatttttgtcattttattattttcctattcgccaa 1383451  T
Q  293 caaattctaaaataatattctcacaaccaaattactaaattgcaataacatagaccaattgtgtggttgttgt 365  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1383450 aaaattctaaaataatattctcacaaccaaattactaaattgcaataacatagaccaattgtgtggttgttgt 1383378  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 20713413 - 20713350
Alignment:
Q  11 cagagaaggacaaagcatgtaaaaaagaattgtatcaagggcattatagtagtttcctatatac 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20713413 cagagaaggacaaagcatgtaaaaaagaattgtatcaagggcattatagtagtttcctatatac 20713350  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 459 - 634
Target Start/End: Complemental strand, 1372738 - 1372562
Alignment:
Q  459 tacaacattgatttttcaacttannnnnnnatgaaaatcttaaagactattttgaaatgtcatccaaagcaacaacacgctctcaagacttttaaacatc 558  Q
    |||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||| |     |||| ||||||||||    
T  1372738 tacaacgttgatttttcaacttatttgtttatgaaaatcttaaagactattttgaaatgtcatccaatgcaacaacacacatgtgagacatttaaacatc 1372639  T
Q  559 caccgccttgaggatgaccccttgccttacaagatgttgcacaca-atcatcactacctggacatgtttccatagga 634  Q
    |||| ||||   |||||||  |||  |||||| ||||  |||||| |||||  ||||||||||||||||||||||||    
T  1372638 caccaccttcgtgatgacctgttgttttacaatatgtatcacacacatcattgctacctggacatgtttccatagga 1372562  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 459 - 634
Target Start/End: Complemental strand, 1380486 - 1380310
Alignment:
Q  459 tacaacattgatttttcaacttannnnnnnatgaaaatcttaaagactattttgaaatgtcatccaaagcaacaacacgctctcaagacttttaaacatc 558  Q
    |||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||| |     |||| ||||||||||    
T  1380486 tacaacgttgatttttcaacttatttgtttatgaaaatcttaaagactattttgaaatgtcatccaatgcaacaacacacatgtgagacatttaaacatc 1380387  T
Q  559 caccgccttgaggatgaccccttgccttacaagatgttgcacaca-atcatcactacctggacatgtttccatagga 634  Q
    |||| ||||   |||||||  |||  |||||| ||||  |||||| |||||  ||||||||||||||||||||||||    
T  1380386 caccaccttcgtgatgacctgttgttttacaatatgtatcacacacatcattgctacctggacatgtttccatagga 1380310  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 1368032 - 1367951
Alignment:
Q  226 aatttgaccaaaacaaattagttcacaaataacatttttgtcattttattattttcctattcgccaacaaattctaaaataa 307  Q
    ||||||| |||||||||||||| |||| ||| ||||||| | | ||| ||||||| ||||| ||||||||||||||||||||    
T  1368032 aatttgatcaaaacaaattagtccacatatatcatttttctaaatttgttatttttctattggccaacaaattctaaaataa 1367951  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 1372870 - 1372829
Alignment:
Q  306 aatattctcacaaccaaattactaaattgcaataacatagac 347  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  1372870 aatattctcacaaccaaaatactagattgcaataacatagac 1372829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 1380618 - 1380577
Alignment:
Q  306 aatattctcacaaccaaattactaaattgcaataacatagac 347  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  1380618 aatattctcacaaccaaaatactagattgcaataacatagac 1380577  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 20713325 - 20713281
Alignment:
Q  99 ggggtaccgcggctcctgcgggtctgtgaagagatccgccgctga 143  Q
    ||||| |||||||||| ||||||||||| ||||||| ||||||||    
T  20713325 ggggtgccgcggctcccgcgggtctgtgcagagatctgccgctga 20713281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 20237461 - 20237524
Alignment:
Q  11 cagagaaggacaaagcatgtaaaaaagaattgtatcaagggcattatagtagtttcctatatac 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20237461 cagagaaggacaaagcatgtaaaaaagaattgtatcaagggcattatagtagtttcctatatac 20237524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 20237547 - 20237591
Alignment:
Q  99 ggggtaccgcggctcctgcgggtctgtgaagagatccgccgctga 143  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  20237547 ggggtaccgcggctcctgcgggtctgtgcagagatccgccgctga 20237591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 44370017 - 44369954
Alignment:
Q  11 cagagaaggacaaagcatgtaaaaaagaattgtatcaagggcattatagtagtttcctatatac 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44370017 cagagaaggacaaagcatgtaaaaaagaattgtatcaagggcattatagtagtttcctatatac 44369954  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 23560548 - 23560611
Alignment:
Q  11 cagagaaggacaaagcatgtaaaaaagaattgtatcaagggcattatagtagtttcctatatac 74  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  23560548 cagagaaggacaaagcatgtaaaaaacaattgtatcaagggcattatagtagttttctatatac 23560611  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 23560636 - 23560680
Alignment:
Q  99 ggggtaccgcggctcctgcgggtctgtgaagagatccgccgctga 143  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  23560636 ggggtaccgcggctcctgcgggtctgtgcagagatccgccgctga 23560680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 44369930 - 44369886
Alignment:
Q  99 ggggtaccgcggctcctgcgggtctgtgaagagatccgccgctga 143  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  44369930 ggggtaccgcggctcctgcgggtctgtgcagagatccgccgctga 44369886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 27691552 - 27691489
Alignment:
Q  11 cagagaaggacaaagcatgtaaaaaagaattgtatcaagggcattatagtagtttcctatatac 74  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27691552 cagagaaggacaaagcatgtaaaaaacaattgtatcaagggcattatagtagtttcctatatac 27691489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 27691464 - 27691420
Alignment:
Q  99 ggggtaccgcggctcctgcgggtctgtgaagagatccgccgctga 143  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  27691464 ggggtaccgcggctcctgcaggtctgtgcagagatccgccgctga 27691420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 49226741 - 49226678
Alignment:
Q  11 cagagaaggacaaagcatgtaaaaaagaattgtatcaagggcattatagtagtttcctatatac 74  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49226741 cagagaaggacaaagcatgtaaaaaacaattgtatcaagggcattatagtagtttcctatatac 49226678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 49226654 - 49226610
Alignment:
Q  99 ggggtaccgcggctcctgcgggtctgtgaagagatccgccgctga 143  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  49226654 ggggtaccgcggctcctgcgggtctgtgcagagatccgccgctga 49226610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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