View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_123 (Length: 322)

Name: NF0809_low_123
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_123
NF0809_low_123
[»] chr5 (20 HSPs)
chr5 (24-250)||(10564793-10565019)
chr5 (22-265)||(10740914-10741157)
chr5 (22-265)||(10717155-10717398)
chr5 (22-260)||(10604508-10604746)
chr5 (22-260)||(10580747-10580998)
chr5 (22-228)||(10611498-10611704)
chr5 (22-269)||(10763348-10763595)
chr5 (24-269)||(11048874-11049119)
chr5 (22-247)||(7192774-7192999)
chr5 (24-268)||(10747232-10747476)
chr5 (22-269)||(10216964-10217211)
chr5 (22-250)||(9836543-9836771)
chr5 (13-248)||(10652408-10652643)
chr5 (24-217)||(19606082-19606275)
chr5 (41-250)||(10588664-10588873)
chr5 (54-247)||(10660332-10660525)
chr5 (24-221)||(10558697-10558894)
chr5 (22-146)||(9824970-9825094)
chr5 (33-108)||(10550692-10550767)
chr5 (59-109)||(10745864-10745917)
[»] chr2 (1 HSPs)
chr2 (22-269)||(17923618-17923865)
[»] chr6 (5 HSPs)
chr6 (22-269)||(12932026-12932273)
chr6 (22-269)||(12906937-12907184)
chr6 (22-268)||(12948392-12948638)
chr6 (22-267)||(12899319-12899564)
chr6 (22-268)||(12957826-12958072)
[»] chr3 (1 HSPs)
chr3 (23-124)||(31467378-31467479)
[»] chr8 (1 HSPs)
chr8 (58-180)||(28605462-28605584)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 10565019 - 10564793
Alignment:
Q  24 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10565019 gttaaaaccttaactaaatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgagctcccttcttttggaggttcaggacct 10564920  T
Q  124 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttcc 223  Q
    | || |||||||||||||||||||| |||||||||||||||||||||  ||||||||||| |||||| || | ||||| | ||||||||||||| |||||    
T  10564919 ttacggcaacaacattatcttctgacacaagatttcctttgtacacaagaccaaaacttcctgatcctatcaagtttctagttgagaacccatcggttcc 10564820  T
Q  224 ttggtgcagttcttggtatgaaacctt 250  Q
    ||| || | ||||||||| ||||||||    
T  10564819 ttgatgtaattcttggtacgaaacctt 10564793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 10740914 - 10741157
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10740914 atgtcaaaatcttaactaaatttcggtgtctaatatttttgagtgcattacattcaacaatgaaactcttgtgagctcccttctttttgaggttcaagac 10741013  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| || ||||||||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||| | |||||  | |||||||||||| |||    
T  10741014 ctttacggcaacaacattgtcttctgtcacaagatttcctttgtacacagaaccaaaacttcctgatccgatcaagtttctttctgagaacccatcggtt 10741113  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaat 265  Q
    ||| |||| |  ||||| |||||||||||  |||||||| ||||    
T  10741114 cctcggtgtaagtcttgatatgaaaccttagctagttgatcaat 10741157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 10717155 - 10717398
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    ||||||| | ||| ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10717155 atgttaatatcttcactagatttcggtgtctgatattttttagtgcattacattcaacaatgaaactcttgtgagctcccttctttttgaggttcaagac 10717254  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| || | |||||  | |||||||||||| |||    
T  10717255 ctttacggcaacaacattgtcttctgacacaagatttcctttgtacacagaaccaaaacttcctgatccaatcaagtttctttctgagaacccatcggtt 10717354  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaat 265  Q
    ||| |||| |  ||||| |||||||||||  |||||||| ||||    
T  10717355 cctcggtgtaagtcttgatatgaaaccttagctagttgatcaat 10717398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 10604746 - 10604508
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||||||||| | ||||| ||| |||||||  ||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| |||    
T  10604746 atgttaaaacttgaactaaattccggtgtcttatagttttgagtgcattacattcaacaatgaaattcttgtgtgctcccttcttttggaggttcaggac 10604647  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| || ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| | |||| || | ||||| ||  ||||||||||| |||    
T  10604646 ctttacagcaactacattatcttctgacacaagatttcctctgtacacagaaccaaaacttcctaatccaatcaagtttctatccgagaacccatcggtt 10604547  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttga 260  Q
    |||||||| |  || |||||||||||||| |||||||||    
T  10604546 ccttggtgtaagtcatggtatgaaaccttatctagttga 10604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 10580998 - 10580747
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||||| |||||| |||| |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  10580998 atgttagaaccttgactaaattttggtgtctaatatttttgagtgcattacattcaacaataaaactcttgtgagctcctttcttttggaggttcaagac 10580899  T
Q  122 cttgactgcaacaaca-------------ttatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttga 208  Q
    ||| ||||||||||||             ||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||||| ||||||| ||  ||    
T  10580898 ctttactgcaacaacattatgcaacaacattatcttctgacacaagatttcctttgtacacggaaccaaaacttcctgacccgatcatgtttctatccga 10580799  T
Q  209 gaacccatcagttccttggtgcagttcttggtatgaaaccttttctagttga 260  Q
    ||||||||||||||||| ||| |  |||| |||||||||||| |||||||||    
T  10580798 gaacccatcagttcctttgtgtaagtctttgtatgaaaccttatctagttga 10580747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 10611704 - 10611498
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    ||||||||| |||||||| ||||||||||| ||||  ||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||    
T  10611704 atgttaaaatcttaactaaatttcggtgtctaataaattttagtgcattacattcaacaatgaaactcttgtgagctccattgttttggaggttgaagac 10611605  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| |  ||||||||||| |||||||| |||||||||||| ||||||||  ||||||||||| ||||||||| | ||||| || |||||||||||| |||    
T  10611604 ctttatagcaacaacattgtcttctgacacaagatttcctctgtacacatcaccaaaacttcctgatccgatcaagtttctatctgagaacccatcggtt 10611505  T
Q  222 ccttggt 228  Q
    |||||||    
T  10611504 ccttggt 10611498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 10763348 - 10763595
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    ||||||||| |||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||    
T  10763348 atgttaaaatcttaactaaattccggtgttgaatattttttagtgcattacattcaacaatgaaactcttgtgagctccattgttttggaggttgaagac 10763447  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
     || |  ||||||| ||| |||||||| |||||||||||| ||||||||  |||| |||||| ||||||||| | ||||  ||  ||||||||||| |||    
T  10763448 ttttatagcaacaatattgtcttctgacacaagatttcctctgtacacatcaccagaacttcctgatccgatcaggtttttatccgagaacccatctgtt 10763547  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 269  Q
    |||||| | |  ||||||||||||||||| ||||||||  ||||||||    
T  10763548 ccttggagtaactcttggtatgaaaccttatctagttgctcaattgtt 10763595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 24 - 269
Target Start/End: Original strand, 11048874 - 11049119
Alignment:
Q  24 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 123  Q
    ||||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||  || ||| || ||||||||||| ||||| |    
T  11048874 gttaaaaccttaactaagtttcggtgtctaatgtttttgagtgcattacattcaacaatgaaactcttgctagctccattgttttggaggttgaagactt 11048973  T
Q  124 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttcc 223  Q
    | || |||||||||||| |||| || |||||||||||| ||||||||||||| |||| || |||||| || | ||||  || |||||| ||||| |||||    
T  11048974 tcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttcc 11049073  T
Q  224 ttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 269  Q
    ||| || |  |||||||||||||| || ||||||||| ||||||||    
T  11049074 ttgatgtaaatcttggtatgaaactttatctagttgatcaattgtt 11049119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 7192999 - 7192774
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||| |||| |||||| | |||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||    
T  7192999 atgtcaaaatcttaaccaaatttcgatgtctaatattttttagtgcattacattcagcaatgaaactcttgtgagctcccttcttttgaaggttcatgac 7192900  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| || |||||||| |||||||||||  |||||||||||||||||||||||||||| |||| |||||| | || ||||| |   || ||||| ||||||    
T  7192899 cttcacggcaacaactttatcttctgattcaagatttcctttgtacacagaaccaaagcttcctgatccaactaagtttctagcagaaaacccgtcagtt 7192800  T
Q  222 ccttggtgcagttcttggtatgaaac 247  Q
    || ||||| || || |||||||||||    
T  7192799 ccctggtgaaggtcctggtatgaaac 7192774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 10747232 - 10747476
Alignment:
Q  24 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 123  Q
    ||||||| |||||||| ||||||||||| ||| || |||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| | ||| |    
T  10747232 gttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaaggtttaggactt 10747331  T
Q  124 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttcc 223  Q
    | || |||||| |||||| ||| || |||||||||||||||||||| ||||||||||||| ||||||||| | ||||| | ||||||| || |  |||||    
T  10747332 ttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctacttgagaaaccgtttgttcc 10747431  T
Q  224 ttggtgcagttcttggtatgaaaccttttctagttgaccaattgt 268  Q
     || || |  ||||||||||||||  |  |||||||| |||||||    
T  10747432 atgatgtaagtcttggtatgaaactgtagctagttgatcaattgt 10747476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 10216964 - 10217211
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||||||||||||||||   |||||||||| ||| |||||||||||||||||||||||||| |||||||||  || ||| |||||||||||||| | |||    
T  10216964 atgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggac 10217063  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| || |||||||||||| ||||||| |||||||| ||  | |||||| |||||||||||| |||||| || | ||||  ||  |||||||||||||||    
T  10217064 cttcacagcaacaacattaacttctgacacaagattcccgctatacacacaaccaaaacttcctgatccaatcaagtttttatccgagaacccatcagtt 10217163  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 269  Q
    ||||| || |  |||||||||||||| ||  |||||||| | ||||||    
T  10217164 ccttgatgtaagtcttggtatgaaactttagctagttgatcgattgtt 10217211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 9836543 - 9836771
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||||| |||||| || | |||||| |||| ||||||||||||||||||||||||| |||| |||||||| |||| ||||||||||| ||||||||  ||    
T  9836543 atgttataaccttgaccaaatttcgatgtctaatatttttgagtgcattacattcagcaataaaactcttatgagctcccttctttttgaggttcagaac 9836642  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| |  |||||||| ||||||| ||| |||| |||||||||||| || | ||||||||||| |||||| || |  |||| || ||||||| ||||||||    
T  9836643 ctttatagcaacaactttatcttgtgatacaatatttcctttgtatacggtaccaaaacttcctgatccaatcaaatttctatctgagaactcatcagtt 9836742  T
Q  222 ccttggtgcagttcttggtatgaaacctt 250  Q
    || || || ||||||||||||||||||||    
T  9836743 ccatgatgtagttcttggtatgaaacctt 9836771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 10652408 - 10652643
Alignment:
Q  13 tcgaataatatgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggag 112  Q
    ||||| || |||| ||||||||||| | |||||  || |  |||||||| ||||||||||||||||||| ||| |||||||||| |||||| ||||| ||    
T  10652408 tcgaacaacatgtcaaaaccttaaccaaatttctatgcctcatattttttagtgcattacattcaacaacgaagctcttgtgagatccctttttttgaag 10652507  T
Q  113 gttcaagaccttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaac 212  Q
    ||||| |||||| |  |||||||| |||||||||||  ||||||||||||||||||||||||||||||||| | |||| |  | ||||| |   || ||     
T  10652508 gttcaggacctttatggcaacaactttatcttctgatgcaagatttcctttgtacacagaaccaaaacttcctaatccaaccaggtttctagcagaaaat 10652607  T
Q  213 ccatcagttccttggtgcagttcttggtatgaaacc 248  Q
    ||||||||||||||||| || |||| ||||||||||    
T  10652608 ccatcagttccttggtgaaggtctttgtatgaaacc 10652643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 19606082 - 19606275
Alignment:
Q  24 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 123  Q
    ||||||| |||||||| |||||| |||| |||||||||||| ||||||||||||  ||| ||||||||||||| |||||||||||  ||||||| |||||    
T  19606082 gttaaaatcttaactaaatttcgatgtctaatatttttgagagcattacattcagtaataaaactcttgtgagctcccttcttttcaaggttcaggacct 19606181  T
Q  124 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatc 217  Q
    | || |||| ||| ||||||||||| | |||||||||||| ||||| ||||| || | || |||||| || | ||||| ||  |||||||||||    
T  19606182 taacagcaataactttatcttctgacataagatttcctttatacacggaaccgaagcctcctgatccaatcaagtttctatccgagaacccatc 19606275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 250
Target Start/End: Original strand, 10588664 - 10588873
Alignment:
Q  41 atttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagaccttgactgcaacaacatta 140  Q
    |||||| |||| || ||| |||||||||||||||||  |||| |||||||| | || |||||||||||  |||||||  |||||||  ||||||   |||    
T  10588664 atttcgatgtctaacattcttgagtgcattacattcggcaataaaactcttatcagctcccttctttttaaggttcagaaccttgatagcaacagattta 10588763  T
Q  141 tcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttccttggtgcagttcttggt 240  Q
    |||| ||| || ||| |||||||||| || |||| |||||||| |||||| || | ||||| || |||||| |||||||||||||| || ||||||||||    
T  10588764 tcttgtgatacgagaattcctttgtatacggaacaaaaacttcctgatccaatcaagtttccatctgagaatccatcagttccttgatgtagttcttggt 10588863  T
Q  241 atgaaacctt 250  Q
    ||||||||||    
T  10588864 atgaaacctt 10588873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 10660332 - 10660525
Alignment:
Q  54 atatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagaccttgactgcaacaacattatcttctgaaacaa 153  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||  ||||| |  |||||||  |||||||||||  |||    
T  10660332 atattttttagtgcattacattcaacaatgaagctcttgtgagctcccttattttgaaggttcagaacctttatggcaacaaatttatcttctgatgcaa 10660431  T
Q  154 gatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttccttggtgcagttcttggtatgaaac 247  Q
    ||||||||||||| ||||||||||||| || | |||| |  | ||||| |   || || ||||||||||||||||| || ||||| ||||||||    
T  10660432 gatttcctttgtagacagaaccaaaacctcctaatccaacaaggtttctagcagaaaatccatcagttccttggtgaaggtcttgatatgaaac 10660525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 10558894 - 10558697
Alignment:
Q  24 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 123  Q
    ||||||| |||||| |||||||| |||| ||||||||| ||||||||||||||   ||| ||||||||||||| ||| |||||||  |||| || |||||    
T  10558894 gttaaaatcttaaccagatttcgatgtctaatattttttagtgcattacattcggtaataaaactcttgtgagctccattcttttcaaggtccaggacct 10558795  T
Q  124 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    | || |||| ||| ||||||||||| | |||||||||||| ||||| |||||||| | || |||||| || | ||||| |  |||||| |||||||||    
T  10558794 tcacagcaataactttatcttctgacataagatttcctttatacaccgaaccaaagcctcctgatccaatcaagtttctagatgagaagccatcagtt 10558697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 9825094 - 9824970
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    ||||||||| |||||| | |||||| |||| ||||||||||||| ||||||||||   ||| ||||||||||||| |||||||||||  | |||||||||    
T  9825094 atgttaaaatcttaaccaaatttcgatgtctaatatttttgagttcattacattcggtaataaaactcttgtgagctcccttcttttcaaagttcaagac 9824995  T
Q  122 cttgactgcaacaacattatcttct 146  Q
    ||| |  |||| ||| |||||||||    
T  9824994 ctttatggcaataactttatcttct 9824970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 10550767 - 10550692
Alignment:
Q  33 ttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttctttt 108  Q
    ||||||||||||| ||| | ||||||||| ||||||||||||||| |||||||||||||||||  |||||||||||    
T  10550767 ttaactagatttctgtgcctaatattttttagtgcattacattcagcaatgaaactcttgtgaactcccttctttt 10550692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 10745864 - 10745917
Alignment:
Q  59 tttgagtgcattacattcaacaatgaaactcttg---tgaggtcccttcttttg 109  Q
    |||||||| |||||||||||||||||||||||||   |||| ||||||||||||    
T  10745864 tttgagtgtattacattcaacaatgaaactcttgacttgagctcccttcttttg 10745917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 17923618 - 17923865
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||| || ||||||||||||||    
T  17923618 atgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaacgaaactcttgtgagctccctttttatggaggttcaagac 17923717  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
     || |||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| ||||||||| ||||||| || |||||| ||||| |||    
T  17923718 tttaactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaacttcctgatccgatcatgtttctatctgagaatccatcggtt 17923817  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 269  Q
    |||  ||| | ||||||||||||||||||  |||||||| ||||||||    
T  17923818 cctacgtgtaattcttggtatgaaaccttagctagttgatcaattgtt 17923865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 12932273 - 12932026
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| || ||||||||    
T  12932273 atgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaatgaaactcttgtgagctccctttttttgcagattcaagac 12932174  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| ||||||||||||||||||||||| || | |||||||||||| || ||||||||||||| ||||||||| ||||||| ||||||||| ||||| |||    
T  12932173 ctttactgcaacaacattatcttctgacactatatttcctttgtaaacggaaccaaaacttcctgatccgatcatgtttctatttgagaatccatcggtt 12932074  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 269  Q
    ||    || | ||||||||||||||||||  |||||||| ||||||||    
T  12932073 ccaacatgtaattcttggtatgaaaccttagctagttgatcaattgtt 12932026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 12907184 - 12906937
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||||||||||||||| | ||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||  |||||  ||||||||||||||||    
T  12907184 atgttaaaaccttaaccaaatttctgtgtctaatatttttgagtgcgttacattcaacaatgaaacttttgtgagcgccctttgtttggaggttcaagac 12907085  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| |||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| ||||||||| ||||||| ||  |||||  |||| |||    
T  12907084 ctttactgcaacaacattatcttctgaaacaatatttcctttgtatacggaaccaaaacttcctgatccgatcatgtttctatccgagaattcatcggtt 12906985  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 269  Q
    |||  ||| | ||||||||||||||||||  |||||||| ||||||||    
T  12906984 cctacgtgtaattcttggtatgaaaccttagctagttgatcaattgtt 12906937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 12948638 - 12948392
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  12948638 atgttaaaaccttaaccaaatttcggtgtctaatattttttagtgcattacattcaacaatgaaactcttgtgagctccctttttctggaggttcaagac 12948539  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
     || |||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| ||||||||| | ||||| || |||||| ||||  |||    
T  12948538 ttttactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaatccatgggtt 12948439  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgt 268  Q
    ||    || | ||||||||||||||||||  |||||||| |||||||    
T  12948438 ccaacatgtaattcttggtatgaaaccttagctagttgatcaattgt 12948392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 12899564 - 12899319
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||  ||||| ||||| || ||||||||    
T  12899564 atgttaaaaccttaaccaaatttcggtgtcgaatgtttttgagtgcattacattctaaaatgaaactcttgtgagcaccctttttttgcagattcaagac 12899465  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
    ||| |||||||||||||||||||||||||| | ||||||| |||| || ||||||||||||| ||||||||| | ||||| || |||||| ||||| |||    
T  12899464 ctttactgcaacaacattatcttctgaaactatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaatccatcggtt 12899365  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattg 267  Q
    |||  ||| | ||||||||| ||||||||  |||||||| ||||||    
T  12899364 cctacgtgtaattcttggtacgaaaccttagctagttgatcaattg 12899319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 12958072 - 12957826
Alignment:
Q  22 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 121  Q
    ||||||||||| |||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  12958072 atgttaaaaccctaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaatgaaactcttgtgagctccctttttctggaggttcaagac 12957973  T
Q  122 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 221  Q
     || | |||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| ||||||||| | ||||| || |||||| ||||  |||    
T  12957972 ttttattgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaatccattggtt 12957873  T
Q  222 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgt 268  Q
    ||    || | ||||||||||||||||||  |||||||| |||||||    
T  12957872 ccaacatgtaattcttggtatgaaaccttagctagttgatcaattgt 12957826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 31467378 - 31467479
Alignment:
Q  23 tgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacc 122  Q
    |||||||| |||||| | ||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||| ||| ||||| || || ||||| |||    
T  31467378 tgttaaaatcttaaccaaatttcggtgtctaatatttttgagtgcattgcattcagcaaggaaactcttgtgagctcctttcttatgaagcttcaaaacc 31467477  T
Q  123 tt 124  Q
    ||    
T  31467478 tt 31467479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 28605584 - 28605462
Alignment:
Q  58 ttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagaccttgactgcaacaacattatcttctgaaacaagatt 157  Q
    ||||||||||||| |||||| | |||||||||||||| | |||| |   ||| |||||||||||||| |  ||||||||  | ||||||||  ||||| |    
T  28605584 ttttgagtgcattgcattcagcgatgaaactcttgtgcgctcccctgacttgaaggttcaagacctttatagcaacaactctttcttctgactcaagaat 28605485  T
Q  158 tcctttgtacacagaaccaaaac 180  Q
    |||||| || ||| | |||||||    
T  28605484 tcctttatatacaaatccaaaac 28605462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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