View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_125 (Length: 316)
Name: NF0809_low_125
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_125 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 35916575 - 35916472
Alignment:
| Q |
47 |
cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35916575 |
cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac |
35916476 |
T |
|
| Q |
147 |
agct |
150 |
Q |
| |
|
|||| |
|
|
| T |
35916475 |
agct |
35916472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 35244884 - 35244969
Alignment:
| Q |
153 |
ggctttgtcacaattttatcaggaacatttctccttcacaagacaaaagatatgggaaataaacaacccgaacaatctcctgcttc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35244884 |
ggctttgtcacaattttatcaggaacatttctccttcacaagacaaaagatatgggaaataaaccacccgaacaatctcctgcttc |
35244969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 37890169 - 37890109
Alignment:
| Q |
156 |
tttgtcacaattttatcaggaacatttctccttcacaagacaaaagatatgggaaataaac |
216 |
Q |
| |
|
||||| ||||||||||| || ||||| ||||||||||| || || |||||||||||||||| |
|
|
| T |
37890169 |
tttgtgacaattttatctgggacattcctccttcacaaaactaaggatatgggaaataaac |
37890109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5806 times since January 2019
Visitors: 5759