View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_126 (Length: 316)
Name: NF0809_low_126
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_126 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 3129240 - 3129399
Alignment:
| Q |
10 |
gcagagaaagagggagaatcaaaagcatttatttattttaaaacaaagaagagagaaagtgtgtaaggtatgaaatcattactattaaaggagatggaag |
109 |
Q |
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| T |
3129240 |
gcagagaaagagggagaatcaaaagcatttatttattttaaaacaaagaagagagaaagtgtgtaaggtatgaaatcattactattaaaggagatggaag |
3129339 |
T |
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| Q |
110 |
c--gagagaggtcaggaaaagggttaaaagagataaagctgtttctgtcaactcaatatc |
167 |
Q |
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| T |
3129340 |
cgagagagaggtcaggaaaagggttaaaagagataaagctgtttctgtcaactcaatatc |
3129399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 3129433 - 3129482
Alignment:
| Q |
240 |
ttaggtacttgatttgatttgattagacgcagtaactaactatgtggctg |
289 |
Q |
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| T |
3129433 |
ttaggtacttgatttgatttgattagacgcagtaactaactatgtggctg |
3129482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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