View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_127 (Length: 316)

Name: NF0809_low_127
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_127
NF0809_low_127
[»] chr5 (20 HSPs)
chr5 (18-244)||(10564793-10565019)
chr5 (16-259)||(10740914-10741157)
chr5 (16-259)||(10717155-10717398)
chr5 (16-254)||(10604508-10604746)
chr5 (16-254)||(10580747-10580998)
chr5 (16-222)||(10611498-10611704)
chr5 (16-263)||(10763348-10763595)
chr5 (18-263)||(11048874-11049119)
chr5 (16-241)||(7192774-7192999)
chr5 (18-262)||(10747232-10747476)
chr5 (16-263)||(10216964-10217211)
chr5 (16-244)||(9836543-9836771)
chr5 (7-242)||(10652408-10652643)
chr5 (18-211)||(19606082-19606275)
chr5 (35-244)||(10588664-10588873)
chr5 (48-241)||(10660332-10660525)
chr5 (18-215)||(10558697-10558894)
chr5 (16-140)||(9824970-9825094)
chr5 (27-102)||(10550692-10550767)
chr5 (53-103)||(10745864-10745917)
[»] chr2 (1 HSPs)
chr2 (16-263)||(17923618-17923865)
[»] chr6 (5 HSPs)
chr6 (16-263)||(12932026-12932273)
chr6 (16-263)||(12906937-12907184)
chr6 (16-262)||(12948392-12948638)
chr6 (16-261)||(12899319-12899564)
chr6 (16-262)||(12957826-12958072)
[»] chr3 (1 HSPs)
chr3 (17-118)||(31467378-31467479)
[»] chr8 (1 HSPs)
chr8 (52-174)||(28605462-28605584)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 10565019 - 10564793
Alignment:
Q  18 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10565019 gttaaaaccttaactaaatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgagctcccttcttttggaggttcaggacct 10564920  T
Q  118 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttcc 217  Q
    | || |||||||||||||||||||| |||||||||||||||||||||  ||||||||||| |||||| || | ||||| | ||||||||||||| |||||    
T  10564919 ttacggcaacaacattatcttctgacacaagatttcctttgtacacaagaccaaaacttcctgatcctatcaagtttctagttgagaacccatcggttcc 10564820  T
Q  218 ttggtgcagttcttggtatgaaacctt 244  Q
    ||| || | ||||||||| ||||||||    
T  10564819 ttgatgtaattcttggtacgaaacctt 10564793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 10740914 - 10741157
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10740914 atgtcaaaatcttaactaaatttcggtgtctaatatttttgagtgcattacattcaacaatgaaactcttgtgagctcccttctttttgaggttcaagac 10741013  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| || ||||||||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||| | |||||  | |||||||||||| |||    
T  10741014 ctttacggcaacaacattgtcttctgtcacaagatttcctttgtacacagaaccaaaacttcctgatccgatcaagtttctttctgagaacccatcggtt 10741113  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaat 259  Q
    ||| |||| |  ||||| |||||||||||  |||||||| ||||    
T  10741114 cctcggtgtaagtcttgatatgaaaccttagctagttgatcaat 10741157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 10717155 - 10717398
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    ||||||| | ||| ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10717155 atgttaatatcttcactagatttcggtgtctgatattttttagtgcattacattcaacaatgaaactcttgtgagctcccttctttttgaggttcaagac 10717254  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| || | |||||  | |||||||||||| |||    
T  10717255 ctttacggcaacaacattgtcttctgacacaagatttcctttgtacacagaaccaaaacttcctgatccaatcaagtttctttctgagaacccatcggtt 10717354  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaat 259  Q
    ||| |||| |  ||||| |||||||||||  |||||||| ||||    
T  10717355 cctcggtgtaagtcttgatatgaaaccttagctagttgatcaat 10717398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 10604746 - 10604508
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||||||||| | ||||| ||| |||||||  ||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| |||    
T  10604746 atgttaaaacttgaactaaattccggtgtcttatagttttgagtgcattacattcaacaatgaaattcttgtgtgctcccttcttttggaggttcaggac 10604647  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| || ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| | |||| || | ||||| ||  ||||||||||| |||    
T  10604646 ctttacagcaactacattatcttctgacacaagatttcctctgtacacagaaccaaaacttcctaatccaatcaagtttctatccgagaacccatcggtt 10604547  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttga 254  Q
    |||||||| |  || |||||||||||||| |||||||||    
T  10604546 ccttggtgtaagtcatggtatgaaaccttatctagttga 10604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 10580998 - 10580747
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||||| |||||| |||| |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  10580998 atgttagaaccttgactaaattttggtgtctaatatttttgagtgcattacattcaacaataaaactcttgtgagctcctttcttttggaggttcaagac 10580899  T
Q  116 cttgactgcaacaaca-------------ttatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttga 202  Q
    ||| ||||||||||||             ||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||||| ||||||| ||  ||    
T  10580898 ctttactgcaacaacattatgcaacaacattatcttctgacacaagatttcctttgtacacggaaccaaaacttcctgacccgatcatgtttctatccga 10580799  T
Q  203 gaacccatcagttccttggtgcagttcttggtatgaaaccttttctagttga 254  Q
    ||||||||||||||||| ||| |  |||| |||||||||||| |||||||||    
T  10580798 gaacccatcagttcctttgtgtaagtctttgtatgaaaccttatctagttga 10580747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 10611704 - 10611498
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    ||||||||| |||||||| ||||||||||| ||||  ||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||    
T  10611704 atgttaaaatcttaactaaatttcggtgtctaataaattttagtgcattacattcaacaatgaaactcttgtgagctccattgttttggaggttgaagac 10611605  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| |  ||||||||||| |||||||| |||||||||||| ||||||||  ||||||||||| ||||||||| | ||||| || |||||||||||| |||    
T  10611604 ctttatagcaacaacattgtcttctgacacaagatttcctctgtacacatcaccaaaacttcctgatccgatcaagtttctatctgagaacccatcggtt 10611505  T
Q  216 ccttggt 222  Q
    |||||||    
T  10611504 ccttggt 10611498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 10763348 - 10763595
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    ||||||||| |||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||    
T  10763348 atgttaaaatcttaactaaattccggtgttgaatattttttagtgcattacattcaacaatgaaactcttgtgagctccattgttttggaggttgaagac 10763447  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
     || |  ||||||| ||| |||||||| |||||||||||| ||||||||  |||| |||||| ||||||||| | ||||  ||  ||||||||||| |||    
T  10763448 ttttatagcaacaatattgtcttctgacacaagatttcctctgtacacatcaccagaacttcctgatccgatcaggtttttatccgagaacccatctgtt 10763547  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 263  Q
    |||||| | |  ||||||||||||||||| ||||||||  ||||||||    
T  10763548 ccttggagtaactcttggtatgaaaccttatctagttgctcaattgtt 10763595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 11048874 - 11049119
Alignment:
Q  18 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 117  Q
    ||||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||  || ||| || ||||||||||| ||||| |    
T  11048874 gttaaaaccttaactaagtttcggtgtctaatgtttttgagtgcattacattcaacaatgaaactcttgctagctccattgttttggaggttgaagactt 11048973  T
Q  118 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttcc 217  Q
    | || |||||||||||| |||| || |||||||||||| ||||||||||||| |||| || |||||| || | ||||  || |||||| ||||| |||||    
T  11048974 tcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttatctgagaatccatcggttcc 11049073  T
Q  218 ttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 263  Q
    ||| || |  |||||||||||||| || ||||||||| ||||||||    
T  11049074 ttgatgtaaatcttggtatgaaactttatctagttgatcaattgtt 11049119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 7192999 - 7192774
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||| |||| |||||| | |||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||    
T  7192999 atgtcaaaatcttaaccaaatttcgatgtctaatattttttagtgcattacattcagcaatgaaactcttgtgagctcccttcttttgaaggttcatgac 7192900  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| || |||||||| |||||||||||  |||||||||||||||||||||||||||| |||| |||||| | || ||||| |   || ||||| ||||||    
T  7192899 cttcacggcaacaactttatcttctgattcaagatttcctttgtacacagaaccaaagcttcctgatccaactaagtttctagcagaaaacccgtcagtt 7192800  T
Q  216 ccttggtgcagttcttggtatgaaac 241  Q
    || ||||| || || |||||||||||    
T  7192799 ccctggtgaaggtcctggtatgaaac 7192774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 10747232 - 10747476
Alignment:
Q  18 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 117  Q
    ||||||| |||||||| ||||||||||| ||| || |||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| | ||| |    
T  10747232 gttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaaggtttaggactt 10747331  T
Q  118 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttcc 217  Q
    | || |||||| |||||| ||| || |||||||||||||||||||| ||||||||||||| ||||||||| | ||||| | ||||||| || |  |||||    
T  10747332 ttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctacttgagaaaccgtttgttcc 10747431  T
Q  218 ttggtgcagttcttggtatgaaaccttttctagttgaccaattgt 262  Q
     || || |  ||||||||||||||  |  |||||||| |||||||    
T  10747432 atgatgtaagtcttggtatgaaactgtagctagttgatcaattgt 10747476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 10216964 - 10217211
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||||||||||||||||   |||||||||| ||| |||||||||||||||||||||||||| |||||||||  || ||| |||||||||||||| | |||    
T  10216964 atgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttggaggtttaggac 10217063  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| || |||||||||||| ||||||| |||||||| ||  | |||||| |||||||||||| |||||| || | ||||  ||  |||||||||||||||    
T  10217064 cttcacagcaacaacattaacttctgacacaagattcccgctatacacacaaccaaaacttcctgatccaatcaagtttttatccgagaacccatcagtt 10217163  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 263  Q
    ||||| || |  |||||||||||||| ||  |||||||| | ||||||    
T  10217164 ccttgatgtaagtcttggtatgaaactttagctagttgatcgattgtt 10217211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 9836543 - 9836771
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||||| |||||| || | |||||| |||| ||||||||||||||||||||||||| |||| |||||||| |||| ||||||||||| ||||||||  ||    
T  9836543 atgttataaccttgaccaaatttcgatgtctaatatttttgagtgcattacattcagcaataaaactcttatgagctcccttctttttgaggttcagaac 9836642  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| |  |||||||| ||||||| ||| |||| |||||||||||| || | ||||||||||| |||||| || |  |||| || ||||||| ||||||||    
T  9836643 ctttatagcaacaactttatcttgtgatacaatatttcctttgtatacggtaccaaaacttcctgatccaatcaaatttctatctgagaactcatcagtt 9836742  T
Q  216 ccttggtgcagttcttggtatgaaacctt 244  Q
    || || || ||||||||||||||||||||    
T  9836743 ccatgatgtagttcttggtatgaaacctt 9836771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 10652408 - 10652643
Alignment:
Q  7 tcgaagaatatgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggag 106  Q
    ||||| || |||| ||||||||||| | |||||  || |  |||||||| ||||||||||||||||||| ||| |||||||||| |||||| ||||| ||    
T  10652408 tcgaacaacatgtcaaaaccttaaccaaatttctatgcctcatattttttagtgcattacattcaacaacgaagctcttgtgagatccctttttttgaag 10652507  T
Q  107 gttcaagaccttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaac 206  Q
    ||||| |||||| |  |||||||| |||||||||||  ||||||||||||||||||||||||||||||||| | |||| |  | ||||| |   || ||     
T  10652508 gttcaggacctttatggcaacaactttatcttctgatgcaagatttcctttgtacacagaaccaaaacttcctaatccaaccaggtttctagcagaaaat 10652607  T
Q  207 ccatcagttccttggtgcagttcttggtatgaaacc 242  Q
    ||||||||||||||||| || |||| ||||||||||    
T  10652608 ccatcagttccttggtgaaggtctttgtatgaaacc 10652643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 19606082 - 19606275
Alignment:
Q  18 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 117  Q
    ||||||| |||||||| |||||| |||| |||||||||||| ||||||||||||  ||| ||||||||||||| |||||||||||  ||||||| |||||    
T  19606082 gttaaaatcttaactaaatttcgatgtctaatatttttgagagcattacattcagtaataaaactcttgtgagctcccttcttttcaaggttcaggacct 19606181  T
Q  118 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatc 211  Q
    | || |||| ||| ||||||||||| | |||||||||||| ||||| ||||| || | || |||||| || | ||||| ||  |||||||||||    
T  19606182 taacagcaataactttatcttctgacataagatttcctttatacacggaaccgaagcctcctgatccaatcaagtttctatccgagaacccatc 19606275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 244
Target Start/End: Original strand, 10588664 - 10588873
Alignment:
Q  35 atttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagaccttgactgcaacaacatta 134  Q
    |||||| |||| || ||| |||||||||||||||||  |||| |||||||| | || |||||||||||  |||||||  |||||||  ||||||   |||    
T  10588664 atttcgatgtctaacattcttgagtgcattacattcggcaataaaactcttatcagctcccttctttttaaggttcagaaccttgatagcaacagattta 10588763  T
Q  135 tcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttccttggtgcagttcttggt 234  Q
    |||| ||| || ||| |||||||||| || |||| |||||||| |||||| || | ||||| || |||||| |||||||||||||| || ||||||||||    
T  10588764 tcttgtgatacgagaattcctttgtatacggaacaaaaacttcctgatccaatcaagtttccatctgagaatccatcagttccttgatgtagttcttggt 10588863  T
Q  235 atgaaacctt 244  Q
    ||||||||||    
T  10588864 atgaaacctt 10588873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 10660332 - 10660525
Alignment:
Q  48 atatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagaccttgactgcaacaacattatcttctgaaacaa 147  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||  ||||| |  |||||||  |||||||||||  |||    
T  10660332 atattttttagtgcattacattcaacaatgaagctcttgtgagctcccttattttgaaggttcagaacctttatggcaacaaatttatcttctgatgcaa 10660431  T
Q  148 gatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagttccttggtgcagttcttggtatgaaac 241  Q
    ||||||||||||| ||||||||||||| || | |||| |  | ||||| |   || || ||||||||||||||||| || ||||| ||||||||    
T  10660432 gatttcctttgtagacagaaccaaaacctcctaatccaacaaggtttctagcagaaaatccatcagttccttggtgaaggtcttgatatgaaac 10660525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 10558894 - 10558697
Alignment:
Q  18 gttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacct 117  Q
    ||||||| |||||| |||||||| |||| ||||||||| ||||||||||||||   ||| ||||||||||||| ||| |||||||  |||| || |||||    
T  10558894 gttaaaatcttaaccagatttcgatgtctaatattttttagtgcattacattcggtaataaaactcttgtgagctccattcttttcaaggtccaggacct 10558795  T
Q  118 tgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    | || |||| ||| ||||||||||| | |||||||||||| ||||| |||||||| | || |||||| || | ||||| |  |||||| |||||||||    
T  10558794 tcacagcaataactttatcttctgacataagatttcctttatacaccgaaccaaagcctcctgatccaatcaagtttctagatgagaagccatcagtt 10558697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 9825094 - 9824970
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    ||||||||| |||||| | |||||| |||| ||||||||||||| ||||||||||   ||| ||||||||||||| |||||||||||  | |||||||||    
T  9825094 atgttaaaatcttaaccaaatttcgatgtctaatatttttgagttcattacattcggtaataaaactcttgtgagctcccttcttttcaaagttcaagac 9824995  T
Q  116 cttgactgcaacaacattatcttct 140  Q
    ||| |  |||| ||| |||||||||    
T  9824994 ctttatggcaataactttatcttct 9824970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 10550767 - 10550692
Alignment:
Q  27 ttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttctttt 102  Q
    ||||||||||||| ||| | ||||||||| ||||||||||||||| |||||||||||||||||  |||||||||||    
T  10550767 ttaactagatttctgtgcctaatattttttagtgcattacattcagcaatgaaactcttgtgaactcccttctttt 10550692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 10745864 - 10745917
Alignment:
Q  53 tttgagtgcattacattcaacaatgaaactcttg---tgaggtcccttcttttg 103  Q
    |||||||| |||||||||||||||||||||||||   |||| ||||||||||||    
T  10745864 tttgagtgtattacattcaacaatgaaactcttgacttgagctcccttcttttg 10745917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 17923618 - 17923865
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||| || ||||||||||||||    
T  17923618 atgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaacgaaactcttgtgagctccctttttatggaggttcaagac 17923717  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
     || |||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| ||||||||| ||||||| || |||||| ||||| |||    
T  17923718 tttaactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaacttcctgatccgatcatgtttctatctgagaatccatcggtt 17923817  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 263  Q
    |||  ||| | ||||||||||||||||||  |||||||| ||||||||    
T  17923818 cctacgtgtaattcttggtatgaaaccttagctagttgatcaattgtt 17923865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 12932273 - 12932026
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| || ||||||||    
T  12932273 atgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaatgaaactcttgtgagctccctttttttgcagattcaagac 12932174  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| ||||||||||||||||||||||| || | |||||||||||| || ||||||||||||| ||||||||| ||||||| ||||||||| ||||| |||    
T  12932173 ctttactgcaacaacattatcttctgacactatatttcctttgtaaacggaaccaaaacttcctgatccgatcatgtttctatttgagaatccatcggtt 12932074  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 263  Q
    ||    || | ||||||||||||||||||  |||||||| ||||||||    
T  12932073 ccaacatgtaattcttggtatgaaaccttagctagttgatcaattgtt 12932026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 12907184 - 12906937
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||||||||||||||| | ||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||  |||||  ||||||||||||||||    
T  12907184 atgttaaaaccttaaccaaatttctgtgtctaatatttttgagtgcgttacattcaacaatgaaacttttgtgagcgccctttgtttggaggttcaagac 12907085  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| |||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| ||||||||| ||||||| ||  |||||  |||| |||    
T  12907084 ctttactgcaacaacattatcttctgaaacaatatttcctttgtatacggaaccaaaacttcctgatccgatcatgtttctatccgagaattcatcggtt 12906985  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgtt 263  Q
    |||  ||| | ||||||||||||||||||  |||||||| ||||||||    
T  12906984 cctacgtgtaattcttggtatgaaaccttagctagttgatcaattgtt 12906937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 12948638 - 12948392
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  12948638 atgttaaaaccttaaccaaatttcggtgtctaatattttttagtgcattacattcaacaatgaaactcttgtgagctccctttttctggaggttcaagac 12948539  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
     || |||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| ||||||||| | ||||| || |||||| ||||  |||    
T  12948538 ttttactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaatccatgggtt 12948439  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgt 262  Q
    ||    || | ||||||||||||||||||  |||||||| |||||||    
T  12948438 ccaacatgtaattcttggtatgaaaccttagctagttgatcaattgt 12948392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 12899564 - 12899319
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||  ||||| ||||| || ||||||||    
T  12899564 atgttaaaaccttaaccaaatttcggtgtcgaatgtttttgagtgcattacattctaaaatgaaactcttgtgagcaccctttttttgcagattcaagac 12899465  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
    ||| |||||||||||||||||||||||||| | ||||||| |||| || ||||||||||||| ||||||||| | ||||| || |||||| ||||| |||    
T  12899464 ctttactgcaacaacattatcttctgaaactatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaatccatcggtt 12899365  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattg 261  Q
    |||  ||| | ||||||||| ||||||||  |||||||| ||||||    
T  12899364 cctacgtgtaattcttggtacgaaaccttagctagttgatcaattg 12899319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 12958072 - 12957826
Alignment:
Q  16 atgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagac 115  Q
    ||||||||||| |||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  12958072 atgttaaaaccctaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaatgaaactcttgtgagctccctttttctggaggttcaagac 12957973  T
Q  116 cttgactgcaacaacattatcttctgaaacaagatttcctttgtacacagaaccaaaacttcatgatccgattatgtttcaatttgagaacccatcagtt 215  Q
     || | |||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| ||||||||| | ||||| || |||||| ||||  |||    
T  12957972 ttttattgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaatccattggtt 12957873  T
Q  216 ccttggtgcagttcttggtatgaaaccttttctagttgaccaattgt 262  Q
    ||    || | ||||||||||||||||||  |||||||| |||||||    
T  12957872 ccaacatgtaattcttggtatgaaaccttagctagttgatcaattgt 12957826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 31467378 - 31467479
Alignment:
Q  17 tgttaaaaccttaactagatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagacc 116  Q
    |||||||| |||||| | ||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||| ||| ||||| || || ||||| |||    
T  31467378 tgttaaaatcttaaccaaatttcggtgtctaatatttttgagtgcattgcattcagcaaggaaactcttgtgagctcctttcttatgaagcttcaaaacc 31467477  T
Q  117 tt 118  Q
    ||    
T  31467478 tt 31467479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 28605584 - 28605462
Alignment:
Q  52 ttttgagtgcattacattcaacaatgaaactcttgtgaggtcccttcttttggaggttcaagaccttgactgcaacaacattatcttctgaaacaagatt 151  Q
    ||||||||||||| |||||| | |||||||||||||| | |||| |   ||| |||||||||||||| |  ||||||||  | ||||||||  ||||| |    
T  28605584 ttttgagtgcattgcattcagcgatgaaactcttgtgcgctcccctgacttgaaggttcaagacctttatagcaacaactctttcttctgactcaagaat 28605485  T
Q  152 tcctttgtacacagaaccaaaac 174  Q
    |||||| || ||| | |||||||    
T  28605484 tcctttatatacaaatccaaaac 28605462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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