View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_128 (Length: 315)
Name: NF0809_low_128
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_128 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 23335 - 23614
Alignment:
| Q |
7 |
taaattatacttagacacaaacagagtgcaaaagataaattagacaaagatccatttaaactaatgtgctgaataattatgaagcaagatatcaaaatca |
106 |
Q |
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|||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23335 |
taaattatacttggacgcaaacagagtgcacaagataaattagacaaagatccatttaaacttatgtgctgaataattatgaagcaagatatcaaaatca |
23434 |
T |
|
| Q |
107 |
aattagataaaactgtgagtggtgaatttctcatcatgatagacaaatgaacttctccctacaaagcatcacacacatttcattttgtcatttccaacat |
206 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
23435 |
aattagataaaactatgagtggtgaatttctcatcttgatagacaaatgaacctctccctacaaagcatcacacacatttcattttgtcattgccagcat |
23534 |
T |
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| Q |
207 |
tacaaataatagttgtatctaaaattggcagcagaataaagcattacaaataatagttgtatctcaaattcacagagaat |
286 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
23535 |
tacaaataatagttgtatctaaaattgccagcagaataaaatattacaaataatagttgtatctcaaattcatagagaat |
23614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 42836254 - 42836533
Alignment:
| Q |
7 |
taaattatacttagacacaaacagagtgcaaaagataaattagacaaagatccatttaaactaatgtgctgaataattatgaagcaagatatcaaaatca |
106 |
Q |
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|||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42836254 |
taaattatacttggacgcaaacagagtgcacaagataaattagacaaagatccatttaaacttatgtgctgaataattatgaagcaagatatcaaaatca |
42836353 |
T |
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| Q |
107 |
aattagataaaactgtgagtggtgaatttctcatcatgatagacaaatgaacttctccctacaaagcatcacacacatttcattttgtcatttccaacat |
206 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
42836354 |
aattagataaaactatgagtggtgaatttctcatcttgatagacaaatgaacctctccctacaaagcatcacacacatttcattttgtcattgccagcat |
42836453 |
T |
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| Q |
207 |
tacaaataatagttgtatctaaaattggcagcagaataaagcattacaaataatagttgtatctcaaattcacagagaat |
286 |
Q |
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| T |
42836454 |
tacaaataatagttgtatctaaaattgccagcagaataaaatattacaaataatagttgtatctcaaattcatagagaat |
42836533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 36931151 - 36931391
Alignment:
| Q |
8 |
aaattatacttagacacaaacagagtgcaaaagataaattagacaaagatccatttaaactaatgtgctgaataattatgaagcaagatatcaaaatcaa |
107 |
Q |
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||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| ||| ||||||| || || |||||||||||||||||||||| ||| |
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| T |
36931151 |
aaattgtacttagatacaaagagagtacaaaagataaattagacaaagatccatt-aaattaatgtgatggatgattatgaagcaagatatcaaaaacaa |
36931249 |
T |
|
| Q |
108 |
attagataaaactgtgagtggtgaatttctcatcatgatagacaaatgaacttctccctacaaagcatcacacacatttcattttgtcatttccaacatt |
207 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||| ||| |||||||| ||| |||||| ||| | | |||| |
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| T |
36931250 |
attagataaaactgtgagtgatgaatttctcatcatgatagagaaatgaacttccctctacacagcgtcacacacgtttatttttgttattgctagcatt |
36931349 |
T |
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| Q |
208 |
acaaataatagttgtatctaaaattggcagcagaataaagca |
249 |
Q |
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| ||| |||||||||||||| |||||| |||||||||||||| |
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| T |
36931350 |
aaaaagaatagttgtatctagaattggtagcagaataaagca |
36931391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 42715444 - 42715576
Alignment:
| Q |
7 |
taaattatacttagacacaaacagagtgcaaaagataaattagacaaagatccatttaaactaatgtgctgaataattatgaagcaagatatcaaaatca |
106 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42715444 |
taaattatacttggacacaaacagagtgcaaaagataaattagacaaagatccatttaaattaatgtgctgaataattatgaagcaagatatcaaaatca |
42715543 |
T |
|
| Q |
107 |
aattagataaaactgtgagtggtgaatttctca |
139 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
42715544 |
aattagataaaagtgtgagtggtgaatttctca |
42715576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 38994770 - 38994814
Alignment:
| Q |
9 |
aattatacttagacacaaacagagtgcaaaagataaattagacaa |
53 |
Q |
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||||||| ||||||||||| |||| ||||||||||||||| |||| |
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| T |
38994770 |
aattatatttagacacaaaaagagcgcaaaagataaattacacaa |
38994814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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