View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_13 (Length: 683)

Name: NF0809_low_13
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_13
NF0809_low_13
[»] chr1 (5 HSPs)
chr1 (295-674)||(29929134-29929513)
chr1 (30-296)||(29929630-29929917)
chr1 (136-170)||(12477451-12477485)
chr1 (146-230)||(15360805-15360889)
chr1 (141-177)||(41638453-41638489)
[»] chr8 (3 HSPs)
chr8 (141-230)||(12224974-12225063)
chr8 (147-182)||(8255311-8255346)
chr8 (147-225)||(26820112-26820189)
[»] chr5 (6 HSPs)
chr5 (138-182)||(27153480-27153524)
chr5 (141-177)||(39257544-39257580)
chr5 (143-176)||(18852894-18852927)
chr5 (146-182)||(1550809-1550845)
chr5 (198-230)||(2933726-2933758)
chr5 (174-230)||(28586841-28586897)
[»] chr7 (6 HSPs)
chr7 (146-177)||(12835095-12835126)
chr7 (142-177)||(19530303-19530338)
chr7 (145-191)||(39711507-39711553)
chr7 (172-230)||(45593794-45593852)
chr7 (140-177)||(2380218-2380255)
chr7 (137-177)||(31341066-31341106)
[»] chr3 (3 HSPs)
chr3 (146-192)||(25867107-25867153)
chr3 (144-177)||(37342885-37342918)
chr3 (146-230)||(20192681-20192765)
[»] chr6 (1 HSPs)
chr6 (144-181)||(34404317-34404354)
[»] chr2 (5 HSPs)
chr2 (144-177)||(5942804-5942837)
chr2 (167-271)||(10143104-10143209)
chr2 (166-230)||(2416244-2416308)
chr2 (141-229)||(7282924-7283012)
chr2 (140-176)||(34005861-34005897)
[»] chr4 (1 HSPs)
chr4 (147-183)||(50399556-50399592)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 295 - 674
Target Start/End: Complemental strand, 29929513 - 29929134
Alignment:
Q  295 tgtgtatgtgtgcgttttactaatgtgtttggtgctcattagattgcggatgacagcccaggcaagggcatattagatgagctacgcactgatggtgtgg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29929513 tgtgtatgtgtgcgttttactaatgtgtttggtgctcattagattgcggatgacagcccaggcaagggcatattagatgagctacgcactgatggtgtgg 29929414  T
Q  395 atacatcttttattgtggtaattgtttcaacacttttttctctttaattgtatttgcaaacttcatgaagcttgaaatttggattattgctttttggtat 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29929413 atacatcttttattgtggtaattgtttcaacacttttttctctttaattgtatttgcaaacttcatgatgcttgaaatttggattattgctttttggtat 29929314  T
Q  495 ctgtggtaagatttgatttgttgctcatgccttttagttatggacaacaatataatcatgtgatgaaagtacatgatccctagtctagatttctccactt 594  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29929313 ctgtggtaagatttgatttgttgctcatgccttttagttatgggcaacaatataatcatgtgatgaaagtacatgatccctagtctagatttctccacgt 29929214  T
Q  595 ctgcacctgatttcttgcacatccactctcaaatctcagtattttgttgacactcccagctaactgattcaaagtataat 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29929213 ctgcacctgatttcttgcacatccactctcaaatctcagtattttgttgacactcccagctaactgattcaaagtataat 29929134  T

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Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 29929917 - 29929630
Alignment:
Q  30 ttaacatgccttgctcgtttaggtctaaacacaaggctcatttctaaggtt---tatctattttaactaaaccctctcaacattgcttatttaatcattc 126  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  29929917 ttaacctgccttgctcgtttaggtctaaacacaaggctcatttctaaggttatctatctattttaactaaaccctctcaacattgcttatttaatcattc 29929818  T
Q  127 attttt------------------acaatttaggccttgtttggataaacaacttgattaagcgcttatgtatactttatttcttcaacaaaacataaaa 208  Q
    ||||||                  |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  29929817 attttttatttctgcaagtatttaacaatttaggccctgtttggataaacaacttgattaagtccttatgtatactttatttcttcaacaaaacataaaa 29929718  T
Q  209 tgaagttaaactgttttcatatttctataagttcttttcatagactattgtggaaagtttatgcgaaatatgctgaaaacaacttatg 296  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  29929717 tgaagttaaactgttttcatatttctataatttcttttcatagactactgtggaaagtttatgtgaaatatgctgaaaacaacttatg 29929630  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 12477485 - 12477451
Alignment:
Q  136 atttaggccttgtttggataaacaacttgattaag 170  Q
    |||||||||||||||||||||||||||| ||||||    
T  12477485 atttaggccttgtttggataaacaacttaattaag 12477451  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 15360805 - 15360889
Alignment:
Q  146 tgtttggataaacaacttgattaagcgcttatgtatactttatttcttcaacaaaacataaaatgaagttaaactgttttcatat 230  Q
    ||||| ||||||||| || || ||| | ||||||||   ||||||||  ||||||| ||||||| |||| |||||||||||||||    
T  15360805 tgtttcgataaacaatttaatcaagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatat 15360889  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 41638489 - 41638453
Alignment:
Q  141 ggccttgtttggataaacaacttgattaagcgcttat 177  Q
    |||| |||||||||||||||||||||||||| |||||    
T  41638489 ggccctgtttggataaacaacttgattaagcacttat 41638453  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 12225063 - 12224974
Alignment:
Q  141 ggccttgtttggataaacaacttgattaagcgcttatgtatactttatttcttcaacaaaacataaaatgaagttaaactgttttcatat 230  Q
    |||| |||||||||||||||||| |||||| |||||||||||  ||||||||   |||||| ||||||| |||| ||||| |||||||||    
T  12225063 ggccctgtttggataaacaacttaattaagagcttatgtataagttatttctaagacaaaagataaaataaagtcaaactattttcatat 12224974  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 182
Target Start/End: Original strand, 8255311 - 8255346
Alignment:
Q  147 gtttggataaacaacttgattaagcgcttatgtata 182  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8255311 gtttggataaacaacttcattaagcgcttatgtata 8255346  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 26820112 - 26820189
Alignment:
Q  147 gtttggataaacaacttgattaagcgcttatgtatactttatttcttcaacaaaacataaaatgaagttaaactgtttt 225  Q
    ||||||||||||||||  |||||||||||| |||||  ||||||||  ||||||| ||||||| |||| ||||| ||||    
T  26820112 gtttggataaacaactcaattaagcgctta-gtataagttatttctataacaaaagataaaataaagtcaaactatttt 26820189  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 27153524 - 27153480
Alignment:
Q  138 ttaggccttgtttggataaacaacttgattaagcgcttatgtata 182  Q
    |||||||||||||||||||||||||| ||| || |||||||||||    
T  27153524 ttaggccttgtttggataaacaacttaatttagtgcttatgtata 27153480  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 39257580 - 39257544
Alignment:
Q  141 ggccttgtttggataaacaacttgattaagcgcttat 177  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39257580 ggccttgtttggataaacaacttaattaagcgcttat 39257544  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 18852894 - 18852927
Alignment:
Q  143 ccttgtttggataaacaacttgattaagcgctta 176  Q
    ||||||||||||||||||||| ||||||||||||    
T  18852894 ccttgtttggataaacaacttaattaagcgctta 18852927  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 1550809 - 1550845
Alignment:
Q  146 tgtttggataaacaacttgattaagcgcttatgtata 182  Q
    |||||||||||||||||| |||||| |||||||||||    
T  1550809 tgtttggataaacaacttaattaagtgcttatgtata 1550845  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 2933758 - 2933726
Alignment:
Q  198 aaaacataaaatgaagttaaactgttttcatat 230  Q
    |||| ||||||||||||||||||||||||||||    
T  2933758 aaaagataaaatgaagttaaactgttttcatat 2933726  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 28586897 - 28586841
Alignment:
Q  174 ttatgtatactttatttcttcaacaaaacataaaatgaagttaaactgttttcatat 230  Q
    ||||||||||  |||||||  ||||||| ||||||| |||| |||||||||||||||    
T  28586897 ttatgtatacactatttctataacaaaagataaaataaagtcaaactgttttcatat 28586841  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 177
Target Start/End: Complemental strand, 12835126 - 12835095
Alignment:
Q  146 tgtttggataaacaacttgattaagcgcttat 177  Q
    ||||||||||||||||||||||||||||||||    
T  12835126 tgtttggataaacaacttgattaagcgcttat 12835095  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 19530338 - 19530303
Alignment:
Q  142 gccttgtttggataaacaacttgattaagcgcttat 177  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19530338 gccttgtttggataaacaaattgattaagcgcttat 19530303  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 39711553 - 39711507
Alignment:
Q  145 ttgtttggataaacaacttgattaagcgcttatgtatactttatttc 191  Q
    |||||| |||||||||||| ||||||||||||||||||  |||||||    
T  39711553 ttgtttcgataaacaacttaattaagcgcttatgtataagttatttc 39711507  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 45593852 - 45593794
Alignment:
Q  172 gcttatgtatactttatttcttcaacaaaacataaaatgaagttaaactgttttcatat 230  Q
    |||||||||||   |||||||  ||||||||||||||| |||| |||||||||||||||    
T  45593852 gcttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatat 45593794  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 2380218 - 2380255
Alignment:
Q  140 aggccttgtttggataaacaacttgattaagcgcttat 177  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  2380218 aggccttatttggataaacaacttaattaagcgcttat 2380255  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 31341066 - 31341106
Alignment:
Q  137 tttaggccttgtttggataaacaacttgattaagcgcttat 177  Q
    |||||||| |||||||||||||||||| || ||||||||||    
T  31341066 tttaggccctgtttggataaacaacttaatcaagcgcttat 31341106  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 25867153 - 25867107
Alignment:
Q  146 tgtttggataaacaacttgattaagcgcttatgtatactttatttct 192  Q
    |||||||||||  ||||| ||||||||||||||||||| ||||||||    
T  25867153 tgtttggataagaaacttaattaagcgcttatgtatacgttatttct 25867107  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 37342918 - 37342885
Alignment:
Q  144 cttgtttggataaacaacttgattaagcgcttat 177  Q
    |||||||||||||||||||| |||||||||||||    
T  37342918 cttgtttggataaacaacttcattaagcgcttat 37342885  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 20192765 - 20192681
Alignment:
Q  146 tgtttggataaacaacttgattaagcgcttatgtatactttatttcttcaacaaaacataaaatgaagttaaactgttttcatat 230  Q
    |||||||||||||| ||  |||||| |||||||||||   ||||| |  ||||||| ||||||| |||| |||| ||||||||||    
T  20192765 tgtttggataaacagctcaattaagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatat 20192681  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 34404317 - 34404354
Alignment:
Q  144 cttgtttggataaacaacttgattaagcgcttatgtat 181  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  34404317 cttgtttggataaacaacttaattaagtgcttatgtat 34404354  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 5942804 - 5942837
Alignment:
Q  144 cttgtttggataaacaacttgattaagcgcttat 177  Q
    |||||||||||||||||||| |||||||||||||    
T  5942804 cttgtttggataaacaacttaattaagcgcttat 5942837  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 10143104 - 10143209
Alignment:
Q  167 taagcgcttatgtatactttatttcttcaacaaaacataaaatgaagttaaactgttttcatat-ttctataagttcttttcatagactattgtggaaag 265  Q
    |||| |||||||||||  ||||||||  ||||||| ||||||| |||| |||||||||| ||||   ||||||||| ||||||||  ||||  |||| ||    
T  10143104 taagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataagctatcatggagag 10143203  T
Q  266 tttatg 271  Q
    ||||||    
T  10143204 tttatg 10143209  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 2416244 - 2416308
Alignment:
Q  166 ttaagcgcttatgtatactttatttcttcaacaaaacataaaatgaagttaaactgttttcatat 230  Q
    ||||| |||||||||||  ||||||||  | ||||| |||||||||||||||| |||||| ||||    
T  2416244 ttaagtgcttatgtataagttatttctgtagcaaaagataaaatgaagttaaattgttttgatat 2416308  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 7282924 - 7283012
Alignment:
Q  141 ggccttgtttggataaacaacttgattaagcgcttatgtatactttatttcttcaacaaaacataaaatgaagttaaactgttttcata 229  Q
    ||||||||||||||||| || || |||||| | |||||||||   ||||| |  || |||| | |||||||||| ||||||||||||||    
T  7282924 ggccttgtttggataaataatttaattaagtgtttatgtataagctatttttataagaaaagaaaaaatgaagtcaaactgttttcata 7283012  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 34005861 - 34005897
Alignment:
Q  140 aggccttgtttggataaacaacttgattaagcgctta 176  Q
    |||||||||||||||||||||||| |||||| |||||    
T  34005861 aggccttgtttggataaacaacttaattaagtgctta 34005897  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 50399556 - 50399592
Alignment:
Q  147 gtttggataaacaacttgattaagcgcttatgtatac 183  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  50399556 gtttggataaacaacttaattaagcgcttatttatac 50399592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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