View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_131 (Length: 311)

Name: NF0809_low_131
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_131
NF0809_low_131
[»] chr8 (2 HSPs)
chr8 (94-247)||(32472318-32472469)
chr8 (94-173)||(20086229-20086308)
[»] chr5 (2 HSPs)
chr5 (93-173)||(36758402-36758482)
chr5 (94-174)||(3777696-3777776)
[»] chr7 (4 HSPs)
chr7 (94-172)||(27866812-27866890)
chr7 (98-166)||(28985287-28985355)
chr7 (134-174)||(47317205-47317245)
chr7 (96-167)||(21166378-21166448)
[»] chr3 (2 HSPs)
chr3 (95-169)||(37460532-37460606)
chr3 (94-172)||(44006395-44006473)
[»] chr1 (3 HSPs)
chr1 (94-167)||(18981488-18981561)
chr1 (126-173)||(9953148-9953195)
chr1 (93-167)||(42486372-42486447)
[»] scaffold0915 (1 HSPs)
scaffold0915 (98-166)||(793-861)
[»] chr4 (2 HSPs)
chr4 (87-176)||(50825968-50826057)
chr4 (94-174)||(43036473-43036553)
[»] chr2 (1 HSPs)
chr2 (95-172)||(34456935-34457012)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 32472469 - 32472318
Alignment:
Q  94 gtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaactttcttaaatatttgtgaataccta 193  Q
    |||||||||||||||||| |||| |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||    
T  32472469 gtagttaactaccgcgggaggcattttagtattttactt--gtctttaggaaacttttgatgtcagaaaagtaactttcttaattatttatgaataccta 32472372  T
Q  194 ttcctaaaataaataaaaatgtagatacatatttcatatcttcttgtctctgct 247  Q
    ||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  32472371 ttcttaaaataaataaaaatgtagatgcatatttcatatcttattgtctttgct 32472318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 20086229 - 20086308
Alignment:
Q  94 gtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaactttct 173  Q
    ||||||||||||||| || |||| || ||||||||| || |||| | |||||||||||||||||| |||| | |||||||    
T  20086229 gtagttaactaccgctggaggcatttaagtattttatttgtgtcgtcaggaaacttttgatgtcaaaaaaactactttct 20086308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 36758482 - 36758402
Alignment:
Q  93 agtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaactttct 173  Q
    |||||||||||||||| |||| || |||| |||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  36758482 agtagttaactaccgctggggacattttaatattttactcttgtctttaggaaacttttgatgtcagaaaagcaactttct 36758402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 3777776 - 3777696
Alignment:
Q  94 gtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaactttctt 174  Q
    ||||||||||||||  | ||||| |||| |||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  3777776 gtagttaactaccgttgagggcattttaatattttacttatgtctttagaaaacttttgatgtcagaaacacaactttctt 3777696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 27866890 - 27866812
Alignment:
Q  94 gtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaactttc 172  Q
    ||||||||||||||| | ||||| || | |||||||||| ||| ||||||| ||||||||| |||||||||||||||||    
T  27866890 gtagttaactaccgctgagggcatttaaatattttacttgtgtttttaggagacttttgatttcagaaaagcaactttc 27866812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 28985287 - 28985355
Alignment:
Q  98 ttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagca 166  Q
    ||||||||||  ||||| ||||| ||  ||||||| ||| |||||||||||||||||||||||| ||||    
T  28985287 ttaactaccgttgggggtaatttcgtcatttacttgtgtttttaggaaacttttgatgtcagaacagca 28985355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 47317245 - 47317205
Alignment:
Q  134 tgtctttaggaaacttttgatgtcagaaaagcaactttctt 174  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  47317245 tgtcgttaggaaacttttgatgtcaaaaaagcaactttctt 47317205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 21166448 - 21166378
Alignment:
Q  96 agttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaa 167  Q
    ||||||||||||| ||||| | ||||||||||||||| ||| |||||| || | |||| |||||||||||||    
T  21166448 agttaactaccgctgggggtattttagtattttacttgtgtttttagg-aagtattgaagtcagaaaagcaa 21166378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 37460532 - 37460606
Alignment:
Q  95 tagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaact 169  Q
    |||||||||||||| || || ||||| ||  ||||||| |||| ||||||||| |||||||||||||||||||||    
T  37460532 tagttaactaccgctggaggtaattttgtcatttacttgtgtcattaggaaacatttgatgtcagaaaagcaact 37460606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 44006473 - 44006395
Alignment:
Q  94 gtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaactttc 172  Q
    ||||||||||||||| ||||||| || ||||||||||||||||| ||  |||| |||  ||||||||||||||| ||||    
T  44006473 gtagttaactaccgctgggggcatttaagtattttacttatgtcattgtgaaattttcaatgtcagaaaagcaattttc 44006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 18981561 - 18981488
Alignment:
Q  94 gtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaa 167  Q
    ||||||||||| ||| |||| || || |||||||||||| ||||||||||||  |||| |||||| ||||||||    
T  18981561 gtagttaactatcgctggggacatttaagtattttacttgtgtctttaggaagttttttatgtcaaaaaagcaa 18981488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 9953195 - 9953148
Alignment:
Q  126 tttacttatgtctttaggaaacttttgatgtcagaaaagcaactttct 173  Q
    ||||||| ||| ||||||||| ||||||||||| ||||||||||||||    
T  9953195 tttacttgtgtttttaggaaatttttgatgtcaaaaaagcaactttct 9953148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 42486447 - 42486372
Alignment:
Q  93 agtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttt-tgatgtcagaaaagcaa 167  Q
    |||||||||||||||| || || | ||||||||||||||| ||| ||||||||| ||| |||||| | ||||||||    
T  42486447 agtagttaactaccgcaggaggtattttagtattttacttgtgtttttaggaaagtttatgatgttaaaaaagcaa 42486372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0915 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0915
Description:

Target: scaffold0915; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 793 - 861
Alignment:
Q  98 ttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagca 166  Q
    ||||||||||  ||||| ||||| ||  ||||||| ||| |||||||||||||||||||||||| ||||    
T  793 ttaactaccgttgggggtaatttcgtcatttacttgtgtttttaggaaacttttgatgtcagaacagca 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 176
Target Start/End: Original strand, 50825968 - 50826057
Alignment:
Q  87 ctcagtagtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaactttcttaa 176  Q
    |||| ||||||||||||||||   | | || || |||||||||||| | | |||||| |||||||||||| |||||| ||| ||||||||    
T  50825968 ctcaatagtagttaactaccggtagagacatttaagtattttacttgtttttttaggcaacttttgatgtaagaaaaacaattttcttaa 50826057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 43036473 - 43036553
Alignment:
Q  94 gtagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaactttctt 174  Q
    |||||||||||||||  |||||| || |||||||||||| |||| ||  |||  |||| |||||| |||||||| ||||||    
T  43036473 gtagttaactaccgctaggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcaaaaaagcaattttctt 43036553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 34457012 - 34456935
Alignment:
Q  95 tagttaactaccgcggggggcaatttagtattttacttatgtctttaggaaacttttgatgtcagaaaagcaactttc 172  Q
    |||||||||||||| | ||||| || |||||||||||| ||||||||  ||  |||| |||||| |||||||| ||||    
T  34457012 tagttaactaccgctgagggcatttaagtattttacttgtgtctttataaagttttttatgtcaaaaaagcaattttc 34456935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4867 times since January 2019
Visitors: 5752