View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_137 (Length: 301)
Name: NF0809_low_137
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0809_low_137 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 26406714 - 26406512
Alignment:
Q |
29 |
cacagacgcaacaatacaacatgtttgtgtcttgnnnnnnnnatttactcattacttaggcttttgttcatcgttagttattgaccttattttgttggtg |
128 |
Q |
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T |
26406714 |
cacagacgcaacaatacaacatgtttgtgtcttgttttttt-atttactcattacttaggtttttgttcatcgttagttattgaccttatttcgttggtg |
26406616 |
T |
 |
Q |
129 |
gccgggtttcaacccaagacttttccatatattatatattgtctctgacaactaataagttaagttcatcagaacactctagttatagttctggcagtta |
228 |
Q |
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|||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
26406615 |
gccgggtttcaacctcagacctttccatatattatgtattgtctctgacaattaataagttaagttcatcagaacactctagttatagttctggcagtta |
26406516 |
T |
 |
Q |
229 |
cttg |
232 |
Q |
|
|
|||| |
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|
T |
26406515 |
cttg |
26406512 |
T |
 |
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