View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_138 (Length: 301)
Name: NF0809_low_138
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_138 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 3545876 - 3546105
Alignment:
| Q |
9 |
atcataggtcgtgtaataatatggtgattatataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaatta |
108 |
Q |
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| T |
3545876 |
atcataggtcgtgtaataatatggtgattatataaaaaacaattacattggtaaacttgttaaatgtttaaagatgttgaattaaaattatcagcaatta |
3545975 |
T |
|
| Q |
109 |
tgtaatgttaaatatgcaaaaatccgttaaatatgtttcaccacgcccgttgcaaatattccgttcttatatatgtggatgcaaattttatgtatcgata |
208 |
Q |
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| T |
3545976 |
tgtaatgttaaatatgccaaaatccgttaaatatg-ttcaccacgcccgttgcaaatattccgtgcttatatatgtggatgcaaattttatgtatcgata |
3546074 |
T |
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| Q |
209 |
taattatatatagactttcaatcaaatttca |
239 |
Q |
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| T |
3546075 |
taattgtatacagattttcaatcaaatttca |
3546105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 24864999 - 24865081
Alignment:
| Q |
35 |
attatataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgtt |
117 |
Q |
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| T |
24864999 |
attatataaaaaataattaaatttttaatattgttgaatgtttaaaaatattaaataaaaattatcagaattaatgtaatgtt |
24865081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 3421404 - 3421331
Alignment:
| Q |
44 |
aaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgtt |
117 |
Q |
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| T |
3421404 |
aaaacaattacattgctaatattgtgaaatgtttaaaggtattaaataaaaattatcaacattaatgtaatgtt |
3421331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 21118615 - 21118553
Alignment:
| Q |
39 |
tataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
101 |
Q |
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||||||||| |||||||||| |||| |||| ||||||||||| || || ||| |||||||||| |
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| T |
21118615 |
tataaaaaataattacattgttaatattgtcaaatgtttaaaaatattaaataaaaattatca |
21118553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 494269 - 494332
Alignment:
| Q |
38 |
atataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
101 |
Q |
| |
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|||||||||| |||| ||||| |||| |||| |||||||||||||| || ||| |||||||||| |
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|
| T |
494269 |
atataaaaaataatttcattgttaatattgtcaaatgtttaaagatattaaatgaaaattatca |
494332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 7183890 - 7183937
Alignment:
| Q |
35 |
attatataaaaaacaattacattggtaatcttgttaaatgtttaaaga |
82 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||| |||||||| |
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|
| T |
7183890 |
attatataaaaaacaattacattagtaatattgtgaaatatttaaaga |
7183937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 3927664 - 3927602
Alignment:
| Q |
39 |
tataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
101 |
Q |
| |
|
||||||||||||||| |||| |||| |||| ||||||||||| ||||| ||| || ||||||| |
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|
| T |
3927664 |
tataaaaaacaattatattgataatattgtgaaatgtttaaaaatgttaaataaatattatca |
3927602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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