View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_144 (Length: 294)
Name: NF0809_low_144
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_144 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 20742930 - 20743166
Alignment:
| Q |
13 |
aatataaaggttcgtagcgtaaccacaaatgcaaatttaaaacaaccgttcaacaaaataaacttattggtataacaattctattacttaccacaaaatc |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20742930 |
aatataaaggttcgcagcgtaaccacaaatgcaaatttaaaacaaccgttcaacaaaataaacttattggtataacaattctattgcttaccacaaaatc |
20743029 |
T |
|
| Q |
113 |
ttctggtgagatccaactgtctcctaatgccacacctacataagaaaaagtttcccaaaatcataccttttctttcagttgttatgttctaaatatagtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20743030 |
ttctggtgagatccaactgtctcctaatgccacacctacataagaaaaagtttcccaaaatcatactttttctttcagttgttatgttctaaatatagtt |
20743129 |
T |
|
| Q |
213 |
taatacaaaagggtccatcatttcctaaccagcacaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20743130 |
taatacaaaagggtccatcatttcctaaccaacacaa |
20743166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 53532593 - 53532416
Alignment:
| Q |
64 |
aacaaaataaacttattggtataacaattctattacttaccacaaaatcttctggtgagatccaactgtctcctaatgccacacctacataagaaaaagt |
163 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||| || |||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
53532593 |
aacaaaataaacttattggcagaacaattctatcacacaccagaaaatcttctggtgacattcaaccgtctcctaataccacacatacataagaaaaagt |
53532494 |
T |
|
| Q |
164 |
ttcccaaaatcataccttttctttcagttgttatgttctaaatatagtttaatacaaaagggtccatcatttcctaac |
241 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||||||||||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
53532493 |
ttcccaaaatcataaattttcttgaagttattatgttctaaaaatattttaatacaaaaggatccatcatttcctaac |
53532416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 1905014 - 1904985
Alignment:
| Q |
259 |
tatacacaaatgaacactttaacaatcatt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1905014 |
tatacacaaatgaacactttaacaatcatt |
1904985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 1909247 - 1909218
Alignment:
| Q |
259 |
tatacacaaatgaacactttaacaatcatt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1909247 |
tatacacaaatgaacactttaacaatcatt |
1909218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4971 times since January 2019
Visitors: 5753